Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00540
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha...    29   0.45 
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    27   3.2  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    26   4.2  

>SPAC13G7.11 |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 269

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +2

Query: 131 PVIIYFIQCYCNL*KVLRFYLKKRKSNRFFNQYIS---MNIMAKLGLLKRQFPMFDY 292
           P+ I F+QCY        F+L   K  RF+ +Y+     N+     L+KR FP  D+
Sbjct: 48  PMDIPFLQCYIEPIDNTSFFLHPFKKIRFWWRYLFYGWWNLKKNQFLIKRTFPDRDF 104


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 211 VTFPFL*IEA*NLLQITITLYKIYYYWCR 125
           +TF FL ++   L +++I++ +   YWCR
Sbjct: 368 ITFRFLLLDKVRLYKLSISVVESSEYWCR 396


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 298 INIIKHRKLPFQQTQFSHNIHRDVLI 221
           +NI K     F+ ++ +HN+HRD+ +
Sbjct: 472 VNISKEFTSSFRHSKAAHNLHRDLYV 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,700
Number of Sequences: 5004
Number of extensions: 50358
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)