Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00540
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0120 + 6984482-6984643,6984748-6984797,6984936-6984996,698...    30   1.4  
08_02_0210 + 14324539-14324609,14324735-14325740,14325838-143273...    29   4.3  

>02_02_0120 +
           6984482-6984643,6984748-6984797,6984936-6984996,
           6985574-6985669,6985754-6985903,6986208-6986339,
           6986641-6986768,6987285-6987327,6987935-6988018,
           6989049-6989090,6989264-6989334,6989621-6989674,
           6989789-6989894,6990038-6990106,6990824-6990967,
           6992038-6992113,6992295-6992353
          Length = 508

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 8   RNSSSRNNSKPALYSTNSNVEPDLSTFHKVL 100
           +N+ S N SKPA +      + DLST H +L
Sbjct: 159 KNTDSGNYSKPASFEGMEKFDSDLSTLHPIL 189


>08_02_0210 +
           14324539-14324609,14324735-14325740,14325838-14327390,
           14327473-14327601,14328345-14328510
          Length = 974

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +2

Query: 44  LYSTNSNVEPDLSTFHKVLFSNL*FTK 124
           ++ TNS+V+P L T+HK+L+    F++
Sbjct: 617 IHETNSDVKPYLETYHKLLWMRSKFSE 643


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,424,868
Number of Sequences: 37544
Number of extensions: 223965
Number of successful extensions: 327
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)