Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00540
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006777-6|AAK72307.1|  517|Caenorhabditis elegans Hypothetical ...    31   0.96 
U23454-9|AAC46522.2|  249|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z72512-1|CAA96663.2|  326|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U00031-1|AAZ82851.1|  330|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AC006777-6|AAK72307.1|  517|Caenorhabditis elegans Hypothetical
           protein Y46H3D.4 protein.
          Length = 517

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 604 LNAVLILLNTN*KIYFIVVVFCLFVNRHTFLITTIS 497
           LN  ++  N +  I+FI+ VF +F + H+FL+   S
Sbjct: 478 LNFFILFSNNSILIFFILKVFVIFYSEHSFLVRRTS 513


>U23454-9|AAC46522.2|  249|Caenorhabditis elegans Hypothetical
           protein C10A4.8 protein.
          Length = 249

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 5   TRNSSSRNNSKPALYSTNSNVEPDLSTFHKVLFSNL*FTKTTPV 136
           T  +     S  +  S+    +PD S FHK+ FSNL F K   V
Sbjct: 45  TSENDMETESASSSASSVGQPKPDFSAFHKI-FSNLDFAKLAAV 87


>Z72512-1|CAA96663.2|  326|Caenorhabditis elegans Hypothetical
           protein R07B5.3 protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 622 FTVFNFLNAVLILLNTN*KIYFIVVVFCLFVNRHTFLITTIS 497
           +TV       LIL N   KIY + ++F +F    T++++++S
Sbjct: 126 YTVLFCSTRTLILFNEKNKIYQLCILFLVFWGPATYVLSSVS 167


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical
           protein F40H6.5 protein.
          Length = 1288

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 301 KCIHTKKVVITVNNTKRYYFVKIASFAAYTVKKPLQSIF 417
           KC +T+ + +  +N  ++YFV + +F      K +   F
Sbjct: 384 KCGYTRNIYVYYDNVDKFYFVSLYTFGRSVTSKVIGIAF 422


>U00031-1|AAZ82851.1|  330|Caenorhabditis elegans Hypothetical
           protein B0361.4 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1

Query: 348 FSVIYCYYYFFSV 310
           FS+IY +YYFFS+
Sbjct: 316 FSIIYYFYYFFSI 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,642,099
Number of Sequences: 27780
Number of extensions: 269974
Number of successful extensions: 510
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)