Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00540
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   2.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.5  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   7.9  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 515 KCVPINKQTKNDNNEIDFSICI*K 586
           +C+  NK T    N ++F IC  K
Sbjct: 117 ECINANKSTDKCENGLNFIICFSK 140


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 363 HKIVSFSVIYCYY 325
           HK+V  S ++CYY
Sbjct: 945 HKVVDASDVWCYY 957


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 381 CKACYFHKIVSFSVIYCYYYFFSVNT 304
           C + +F ++ +   +  YYYFF+  T
Sbjct: 458 CPSIHFAQLFADRGMKVYYYFFTQRT 483


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 381 CKACYFHKIVSFSVIYCYYYFFSVNT 304
           C + +F ++ +   +  YYYFF+  T
Sbjct: 458 CPSIHFAQLFADRGMKVYYYFFTQRT 483


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 283 HRKLPFQQTQFSHNIHRDVLIEKSV 209
           HR LP + T  S  + RD++  + V
Sbjct: 125 HRDLPGKSTTTSVEVKRDIINPEDV 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,139
Number of Sequences: 438
Number of extensions: 3669
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)