Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00540
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39630.1 68418.m04799 vesicle transport v-SNARE family protei...    29   2.1  
At5g17320.1 68418.m02029 homeobox-leucine zipper family protein ...    29   2.7  
At4g29490.1 68417.m04208 Xaa-Pro dipeptidase, putative / prolida...    29   2.7  

>At5g39630.1 68418.m04799 vesicle transport v-SNARE family protein
           similar to v-SNARE AtVTI1a (GI:10177700) Arabidopsis
           thaliana; contains Pfam profile PF05008: Vesicle
           transport v-SNARE protein
          Length = 207

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 8   RNSSSRNNSKPALYSTNSNVEPDLSTFHKVLFSNL*FTKTTPVIIYFI 151
           R   S  NS+  L+  +  V+   S    +      FT T P+IIYF+
Sbjct: 156 RQKESLQNSQAMLHEIDDTVKESRSIVRSIKIKEF-FTVTAPIIIYFL 202


>At5g17320.1 68418.m02029 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
            Roc1 (GI:1907210) [Oryza sativa]; contains Pfam
           PF00046: Homeobox domain and Pfam PF01852: START domain
          Length = 718

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 2   GTRNSSSRNNSKPALYSTNSNVEPDLSTFHKVLFSNL*FTKTTP 133
           G  N +S + ++PALY T+SN  P+ S+  +  ++      T P
Sbjct: 173 GPSNHASTSKNRPALYGTSSNRLPEPSSIFRGPYTRGNMNTTAP 216


>At4g29490.1 68417.m04208 Xaa-Pro dipeptidase, putative / prolidase,
           putative / imidodipeptidase, putative similar to
           SP|P12955 Xaa-Pro dipeptidase (EC 3.4.13.9) (X-Pro
           dipeptidase) (Proline dipeptidase) (Prolidase)
           (Imidodipeptidase) {Homo sapiens}; contains Pfam
           profiles PF00557: metallopeptidase family M24, PF05195:
           Aminopeptidase P, N-terminal domain
          Length = 333

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 11  NSSSRNNSKPALYSTNSNVEPDLSTFHKVL 100
           N+ S N SKPA +      E DL+T H +L
Sbjct: 149 NTDSSNFSKPASFEGIDKFETDLTTLHPIL 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,132,349
Number of Sequences: 28952
Number of extensions: 220004
Number of successful extensions: 417
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)