Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00539
         (601 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   2.6  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   4.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   4.6  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   7.9  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 164 AHLNSNELKEMLN 202
           AHLNSNE +  LN
Sbjct: 588 AHLNSNEARATLN 600


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 424 SAGISPDTTHALLQTAAAESEEQSDN 501
           S  + P+T +A++   A+   E SDN
Sbjct: 451 SPEVFPNTNNAIMTPPASVQTESSDN 476


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 424 SAGISPDTTHALLQTAAAESEEQSDN 501
           S  + P+T +A++   A+   E SDN
Sbjct: 399 SPEVFPNTNNAIMTPPASVQTESSDN 424


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 424 ILFYNHLVILEYGYRAVPLIL 362
           I+FY + +ILE  ++ + LI+
Sbjct: 48  IVFYMYTLILEERFKLINLII 68


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,880
Number of Sequences: 336
Number of extensions: 1944
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)