Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00539
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    29   0.52 
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   2.1  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    27   2.8  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    26   4.8  
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    25   6.4  

>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 15/57 (26%), Positives = 35/57 (61%)
 Frame = +1

Query: 331 ERMKAELQEKSELGEQLCTRIQELLDDYKTKSAGISPDTTHALLQTAAAESEEQSDN 501
           E+ K  +  ++E  E++  R+Q+ LD +  K++  SP++ +A    + +ES+ +S++
Sbjct: 520 EKKKGRVLSETEQAEKI-RRLQQQLDRFAGKTSPTSPESNNA-ANVSDSESDNESES 574


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 325 ELERMKAELQEKSELGEQLCTRIQELLDDYKTKS 426
           +LE +K   +E+  + E L  RIQ L     TKS
Sbjct: 435 QLEHLKHNYEEEKSMNENLLVRIQTLEKQNTTKS 468


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
 Frame = +1

Query: 286 NRSLAEFNLGKEPELERMKAELQEKSELGEQLCTRIQELLDDYKTKSAGISPDTTHALLQ 465
           ++ L     GK  +L  +K   QE+S       TR +  + DY+ ++     +       
Sbjct: 139 DKPLTSAAAGKRDKLTELKKRRQERSARSVSERTRKRSPVSDYEEQNESEKSEEEEGYSP 198

Query: 466 TAAAESEEQ--SDNIAKTFY 519
           + A E  EQ   DN +   Y
Sbjct: 199 SYAEEKVEQVSKDNASANLY 218


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 137 DYPSVMGLLAHLNSNELKEMLNDDAKF 217
           DY +V G+  H +S  LKE  N DA +
Sbjct: 242 DYGNVYGVPEHTSSLSLKETNNSDAGY 268


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 316 KEPELERMKAELQEKSELGEQLCTRIQELLDDYKTKSAGI 435
           ++  LER KAE+++ SE  E    ++ +L ++ K K + I
Sbjct: 140 QKERLERRKAEMKKMSEQAELESEKMADLKNEEKKKFSKI 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,074,228
Number of Sequences: 5004
Number of extensions: 35356
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)