Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00539
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456...    34   0.100
05_07_0116 - 27785083-27786123,27786201-27786278,27786364-277869...    33   0.13 
12_02_0213 - 15745459-15745908,15745981-15746559                       30   1.6  
10_08_0042 - 14383143-14383628,14383647-14384609,14384697-143864...    29   3.8  
09_01_0128 + 1932721-1935181,1936099-1936256                           28   5.0  
08_02_0077 - 11979497-11979654,11980012-11982178                       27   8.7  
02_04_0314 - 21950400-21950639,21951384-21951680,21951791-219519...    27   8.7  

>01_01_0612 +
           4565422-4565481,4565597-4565671,4565760-4566332,
           4566438-4566551,4566676-4567377
          Length = 507

 Score = 33.9 bits (74), Expect = 0.100
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = +1

Query: 316 KEPELERMKAELQEKSELGEQLCTRIQELLDDYKTKSAGISPDTTHALLQTAAAESEEQS 495
           KE ++E  KAE+ E  E  E+L T +  ++ DYK+       D      QTAA  S +  
Sbjct: 45  KEEKMEAAKAEMGEVREENERLKTMLTRIVSDYKSLHTHFL-DVVKVKEQTAAELSGDDD 103

Query: 496 DN 501
           D+
Sbjct: 104 DD 105


>05_07_0116 -
           27785083-27786123,27786201-27786278,27786364-27786976,
           27787128-27787213,27787316-27787438,27787600-27787734,
           27787930-27788019,27788796-27788981,27789560-27789661,
           27789787-27789900,27790010-27790153,27790260-27790325,
           27790895-27791056,27791668-27791916
          Length = 1062

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 20/51 (39%), Positives = 26/51 (50%)
 Frame = +1

Query: 343 AELQEKSELGEQLCTRIQELLDDYKTKSAGISPDTTHALLQTAAAESEEQS 495
           AELQ KS   E+ C  +   LD+ K +S        H LLQ  A ES+ +S
Sbjct: 560 AELQTKSSKLEERCVSLSSALDNAKRESVDWKNKYDHNLLQQKADESKLKS 610


>12_02_0213 - 15745459-15745908,15745981-15746559
          Length = 342

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +1

Query: 253 LDTEKEMFIASNRSLAEFNLGKEPELERMKAELQEKSELGEQLCTRIQELLDDYKTKSAG 432
           L+TE     A    L E +     E++ +KA+LQE+    ++  ++++E L   K  + G
Sbjct: 160 LETEVTDLTAQQLQLEEEHQAWGSEIDSLKAQLQEQLRESQEHVSQLEEPLRAAKISTTG 219

Query: 433 ISPDT 447
            S  T
Sbjct: 220 ASTST 224


>10_08_0042 -
           14383143-14383628,14383647-14384609,14384697-14386443,
           14387901-14388010,14388767-14389003
          Length = 1180

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +1

Query: 412 YKTKSAGISPDTTHALLQTAAAESEEQSDNIAKTFY--LENGC 534
           ++ K+ G+SPDT    +         + D   K FY  +EN C
Sbjct: 599 HELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNC 641


>09_01_0128 + 1932721-1935181,1936099-1936256
          Length = 872

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 167 HLNSNELKEMLNDDAKFESVLKDVKQVKDW 256
           H++  + + +L+DDA  ES+L  VK   +W
Sbjct: 610 HMSRAKKRLLLSDDASQESILLQVKNAYEW 639


>08_02_0077 - 11979497-11979654,11980012-11982178
          Length = 774

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 167 HLNSNELKEMLNDDAKFESVLKDVKQVKDW 256
           H+ S   +  L+DDA  E +L+ VK   +W
Sbjct: 512 HMASARKRPPLSDDASMECILEQVKVAYEW 541


>02_04_0314 -
           21950400-21950639,21951384-21951680,21951791-21951920,
           21952377-21952699,21953385-21953606,21953693-21954089,
           21954488-21954540
          Length = 553

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +1

Query: 316 KEPELERMKAELQEKS-ELGEQLCTRIQELLDDYKTKSAGIS-PDTTHALLQTAAAESEE 489
           KE +LER+   L   + E  E+LCT     +D  +  + G+S  D    ++  A+ +S+ 
Sbjct: 194 KEEDLERLNLPLMVATKENEEKLCTAFTVTVDAKEGTTTGVSAKDRAKTVMTLASPDSKP 253

Query: 490 QSDN 501
           +  N
Sbjct: 254 EDFN 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,798,998
Number of Sequences: 37544
Number of extensions: 185176
Number of successful extensions: 469
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)