Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00539
(601 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18353| Best HMM Match : Mod_r (HMM E-Value=0.0004) 68 5e-12
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.076
SB_42644| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_34241| Best HMM Match : RuvA_C (HMM E-Value=1.5) 31 0.94
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.94
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10) 29 2.9
SB_40684| Best HMM Match : NIF (HMM E-Value=0) 29 3.8
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 28 5.0
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 28 5.0
>SB_18353| Best HMM Match : Mod_r (HMM E-Value=0.0004)
Length = 85
Score = 68.1 bits (159), Expect = 5e-12
Identities = 38/84 (45%), Positives = 51/84 (60%)
Frame = +1
Query: 247 QRLDTEKEMFIASNRSLAEFNLGKEPELERMKAELQEKSELGEQLCTRIQELLDDYKTKS 426
++++ +EM ASNRSLAEFNL EP+L + + +L E E E L + Q T S
Sbjct: 2 KKIEVNREMLTASNRSLAEFNLKIEPQLNQGRQQLIEAHERREMLQAQFQSNKAKLDTLS 61
Query: 427 AGISPDTTHALLQTAAAESEEQSD 498
S DTT ALLQTA A++EE S+
Sbjct: 62 DQYSSDTTTALLQTAVAQAEEDSE 85
>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3212
Score = 34.3 bits (75), Expect = 0.076
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Frame = +1
Query: 244 GQRLDTEKEMFIASNRSLAEFNLGKEPELERMKAE---LQEKSELGEQLCTRIQELLDDY 414
G+ ++E E+ + SL E N + EL+ + E LQ + EL ++ TR++ LL+ Y
Sbjct: 1965 GESANSEAELDFGIS-SLVEENAKLKVELKDINVENEELQSQLELTKEELTRVEALLETY 2023
Query: 415 KTKSAGISPDTTHALLQTAAAESEEQSDNI 504
+ KS+ I+ T L ++ EE +
Sbjct: 2024 R-KSSSITSSTPSILQKSPGITVEEDMSQV 2052
>SB_42644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 33.5 bits (73), Expect = 0.13
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +1
Query: 247 QRLDTEKEMFIASNRSLAEFNLGKEPELERMKAELQEKSELGEQLCTRIQELLDD--YKT 420
++L E+E + N +A +NL +P+LE K + ++E+ + E LDD +KT
Sbjct: 55 KKLQEEQENLMLQNEEIARYNLSLQPKLEACKDAI-IRNEIAD-------EFLDDWAFKT 106
Query: 421 KSAGISPDTTHALL 462
G + TH +L
Sbjct: 107 SKRGEIEERTHKIL 120
>SB_34241| Best HMM Match : RuvA_C (HMM E-Value=1.5)
Length = 274
Score = 30.7 bits (66), Expect = 0.94
Identities = 9/32 (28%), Positives = 24/32 (75%)
Frame = +2
Query: 152 MGLLAHLNSNELKEMLNDDAKFESVLKDVKQV 247
+ L+ HL+ EL+E+++ + +++L+D+++V
Sbjct: 116 LSLMKHLDKGELQEIMDSEENLDNILRDLEEV 147
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 30.7 bits (66), Expect = 0.94
Identities = 18/75 (24%), Positives = 35/75 (46%)
Frame = +1
Query: 247 QRLDTEKEMFIASNRSLAEFNLGKEPELERMKAELQEKSELGEQLCTRIQELLDDYKTKS 426
+ L E + ASN +L E E+ +K +L+ E RI+ELL + S
Sbjct: 353 ENLAAEAKQLEASNNALKRDKKALEDEINLLKMQLESSKHANEVSQERIRELLAQLERAS 412
Query: 427 AGISPDTTHALLQTA 471
++ + +++++A
Sbjct: 413 MQVAAPVSVSVVESA 427
>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
Length = 2155
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Frame = +1
Query: 247 QRLDTEKEMFIASNRSLAEFNLGKEPELERMKAELQEKSELGEQLCTRIQELLDDYKTKS 426
Q +DTE+ + + L E + + E+ER+K EL+ EQ+ + + K ++
Sbjct: 371 QAMDTERMVAASPGEYLNEAH--SQDEIERLKLELEVVQREKEQILEEKDRIREIVKEEN 428
Query: 427 AGISPDTTHAL--LQTAAAESEEQSDNI 504
+ +S D T + L+++ E EE D +
Sbjct: 429 SMVS-DLTENIRGLESSRQELEELVDKL 455
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 253 LDTEKEMFIASNRSLAEFNLGKEPELERMKAELQEKSELGEQLCTRI-QELLDDYKTKSA 429
LD K+ F L E E+MKAE+++ S ++CT++ QE + K K
Sbjct: 275 LDKAKKNFEKIKIRLKNNIKSTREEKEKMKAEIEKISSEKHEICTKLRQEFEEALKDKDD 334
Query: 430 GIS 438
+S
Sbjct: 335 VLS 337
>SB_40684| Best HMM Match : NIF (HMM E-Value=0)
Length = 402
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 388 RIQELLDDYKTKSAGISPDTTHALLQTAAAESEEQSDNIAKTFYLENG 531
+IQ L ++ T G+ +H A E+EEQS +KT ++NG
Sbjct: 121 QIQTLGNNSSTIVGGVKDKISHESCNGVAVENEEQSCVNSKTTIVQNG 168
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 325 ELERMKAELQEKSELGEQLCTRIQE 399
+L+ +K +L+EK+EL EQL ++ E
Sbjct: 1322 KLDALKIQLEEKAELAEQLRAQVDE 1346
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 28.3 bits (60), Expect = 5.0
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +1
Query: 289 RSLAEFNLGKEPELERMKAELQEK--SELGEQLCTRIQELLDDYKTKSAGISPDTTHALL 462
RS +EF+L ++ R KAE EK +++ + C E L Y + +S D TH +
Sbjct: 578 RSFSEFHLQRDATERRQKAEQLEKELADVRDVECVLCGEDLKSYYQACSELS-DLTHRV- 635
Query: 463 QTAAAESEEQSDNIAKTF 516
A++ S+ SD KTF
Sbjct: 636 -KASSVSQGASD---KTF 649
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,354,359
Number of Sequences: 59808
Number of extensions: 232974
Number of successful extensions: 740
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -