Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00539
         (601 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    27   0.61 
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    27   0.61 
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           23   5.7  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   7.5  
AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T...    23   10.0 
AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/T...    23   10.0 
AF080563-1|AAC31943.1|  310|Anopheles gambiae Ultrabithorax home...    23   10.0 
AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax home...    23   10.0 

>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 26.6 bits (56), Expect = 0.61
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 334 RMKAELQEKSELGEQLCTRIQELLDDYKTKSAGISPDTT 450
           RMK EL+ K    + L   + ++ DD++   +GIS  TT
Sbjct: 363 RMK-ELELKERSSKSLLANVLDIDDDFRHPCSGISGSTT 400


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 26.6 bits (56), Expect = 0.61
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 334 RMKAELQEKSELGEQLCTRIQELLDDYKTKSAGISPDTT 450
           RMK EL+ K    + L   + ++ DD++   +GIS  TT
Sbjct: 363 RMK-ELELKERSSKSLLANVLDIDDDFRHPCSGISGSTT 400


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 256  DTEKEMFIASNRSLAEFNLGKEPELERMKAE 348
            DTE+E   ASNR  AE     + E +  + E
Sbjct: 1079 DTEREQRAASNREEAEIQQQLQREEDERRTE 1109


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 319 EPELERMKAELQEKSELGEQLCTRIQEL 402
           E ELER+K  + EK +  EQ+  R + +
Sbjct: 327 EQELERLKITIAEKEKELEQVRPRYEAM 354


>AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1977

 Score = 22.6 bits (46), Expect = 10.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 397  ELLDDYKTKSAGISPDTTHALLQTAAAES 483
            +L+   K  +  +SP  TH+   T  A S
Sbjct: 1337 DLMSPCKPTNGSLSPSATHSRFSTPGARS 1365


>AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1978

 Score = 22.6 bits (46), Expect = 10.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 397  ELLDDYKTKSAGISPDTTHALLQTAAAES 483
            +L+   K  +  +SP  TH+   T  A S
Sbjct: 1334 DLMSPCKPTNGSLSPSATHSRFSTPGARS 1362


>AF080563-1|AAC31943.1|  310|Anopheles gambiae Ultrabithorax
           homeotic protein IVa protein.
          Length = 310

 Score = 22.6 bits (46), Expect = 10.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 424 SAGISPDTTHALLQTAAAESEEQSDNI 504
           S G+SP T H L QT  A+      +I
Sbjct: 46  SLGMSPYTNHHLHQTRTAQESPYDASI 72


>AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax
           homeotic protein IIa protein.
          Length = 327

 Score = 22.6 bits (46), Expect = 10.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 424 SAGISPDTTHALLQTAAAESEEQSDNI 504
           S G+SP T H L QT  A+      +I
Sbjct: 46  SLGMSPYTNHHLHQTRTAQESPYDASI 72


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 502,003
Number of Sequences: 2352
Number of extensions: 8512
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58029966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)