Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00539
(601 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR... 31 0.77
At5g15130.1 68418.m01773 WRKY family transcription factor contai... 29 1.8
At1g63600.1 68414.m07189 protein kinase-related low similarity t... 29 1.8
At1g15940.1 68414.m01913 expressed protein similar To androgen-i... 29 1.8
At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / hea... 28 4.1
At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2) ide... 28 4.1
At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2) ide... 28 4.1
At4g31570.1 68417.m04483 expressed protein 28 5.4
At2g34900.1 68415.m04285 DNA-binding bromodomain-containing prot... 27 7.2
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 27 9.5
At5g35960.1 68418.m04330 protein kinase, putative contains prote... 27 9.5
At4g35920.3 68417.m05107 expressed protein contains Pfam profile... 27 9.5
At4g35920.2 68417.m05106 expressed protein contains Pfam profile... 27 9.5
At4g35920.1 68417.m05105 expressed protein contains Pfam profile... 27 9.5
At3g54170.1 68416.m05988 FKBP12 interacting protein (FIP37) iden... 27 9.5
>At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1195
Score = 30.7 bits (66), Expect = 0.77
Identities = 18/56 (32%), Positives = 33/56 (58%)
Frame = +2
Query: 83 KNKSNYYPK*GNKKMIQSDYPSVMGLLAHLNSNELKEMLNDDAKFESVLKDVKQVK 250
KNK Y KK+ +S+ +VMG+L L+ +E+ + D+KF S + +++ +K
Sbjct: 556 KNKRMRYVNQPRKKVTESEMDNVMGIL--LDVSEMDNNMTLDSKFFSEMCNLRYLK 609
>At5g15130.1 68418.m01773 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain; TMV
response-related gene product, Nicotiana tabacum,
EMBL:AB024510
Length = 548
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 313 GKEPELERMKAELQEKSELGEQLCTRIQELLDDYKT 420
G ELE KAE+ E E E+L ++ + DYK+
Sbjct: 31 GDHQELESAKAEMSEVKEENEKLKGMLERIESDYKS 66
>At1g63600.1 68414.m07189 protein kinase-related low similarity to
receptor-like protein kinase 5 [Arabidopsis thaliana]
GI:13506747; contains Pfam profile: PF01657 Domain of
unknown function DUF26
Length = 302
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 388 RIQELLDDYKTKSAGISPDTTHALLQTAAAESEEQSDNIAKTFYLE 525
R++ L Y +AGISPDT + SE + +T LE
Sbjct: 62 RLRSSLGSYSNATAGISPDTVRGMFLCRGDISETSCSDCVQTATLE 107
>At1g15940.1 68414.m01913 expressed protein similar To
androgen-induced prostate proliferative shutoff
associated protein (GI:4559410) [Homo sapiens]
Length = 990
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +1
Query: 259 TEKEMFIASNRSLAEFNLGKEPELERMKAELQEKSELGEQLC-TRIQELLDDYKTKSAGI 435
++KE + E +EP E K +++EK EQ T++ E D KTK I
Sbjct: 885 SQKETNVEPEAEGEEQKSVEEPNAEP-KTKVEEKESAKEQTADTKLIEKEDMSKTKGEEI 943
Query: 436 SPDTTHALLQTAAAESEEQSDN 501
+T ++ +T +E + D+
Sbjct: 944 DKETYSSIPETGKVGNEAEEDD 965
>At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / heat
shock protein 83 (HSP83) nearly identical to SP|P27323
Heat shock protein 81-1 (HSP81-1) (Heat shock protein
83) {Arabidopsis thaliana}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00183: Hsp90 protein
Length = 705
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 292 SLAEFNLGKEPELERMKAELQEKSELGEQLCTRIQELLDD 411
S + L E E E K + +EK + E LC I+E+L D
Sbjct: 520 SATKEGLKLEDETEEEKKKREEKKKSFENLCKTIKEILGD 559
>At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2)
identical to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; supporting cDNA
gi|12006359|gb|AF281154.1|AF281154
Length = 810
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 319 EPELERMKAELQEKSELGEQLCTRIQELLDDYKTKSAGISPDTTHALLQTAAAESEEQS 495
EP++ QE+ + E +CT +Q L+D +++ S D H T ESE+ S
Sbjct: 243 EPQMSEDIRIAQEEDTVRETICTIVQRLVDSHES-----SGDNLHRDGHTENLESEKTS 296
>At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2)
identical to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; supporting cDNA
gi|12006359|gb|AF281154.1|AF281154
Length = 809
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 319 EPELERMKAELQEKSELGEQLCTRIQELLDDYKTKSAGISPDTTHALLQTAAAESEEQS 495
EP++ QE+ + E +CT +Q L+D +++ S D H T ESE+ S
Sbjct: 243 EPQMSEDIRIAQEEDTVRETICTIVQRLVDSHES-----SGDNLHRDGHTENLESEKTS 296
>At4g31570.1 68417.m04483 expressed protein
Length = 2712
Score = 27.9 bits (59), Expect = 5.4
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Frame = +1
Query: 253 LDTEKEMFIASNRSLAEFNLG----KEPELERMKAELQEKSELGEQLCTRIQELLDDYKT 420
L+ E + S S EF + K E+E + L+++ E I+E L +KT
Sbjct: 1261 LELESGVIFESPSSQVEFLVSQLVQKFIEIEELANLLRKQLEAKGNELMEIEESLLHHKT 1320
Query: 421 KSAGISPDTTHALLQTAAAESEEQ 492
K AG+ T A A SE Q
Sbjct: 1321 KIAGLRESLTQAEESLVAVRSELQ 1344
>At2g34900.1 68415.m04285 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 386
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 286 NRSLAEFNLGKEPELERMKAELQEKSELGEQLCTRIQELLDDYKTKSAGISPDTT 450
N LA FN E ELE + E ++ QL ++ E+ Y TK +T+
Sbjct: 19 NTELAVFNGNGESELENFGTCVDEITDRVNQLEQKVVEVEHFYSTKDGAAQTNTS 73
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 27.1 bits (57), Expect = 9.5
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
Frame = +1
Query: 247 QRLDTEKEMFIASNRSLAEFNLGKEPELERMKAELQEK----SELGEQL------CTRIQ 396
++L+TE + + L+E + + E KA LQEK ++L ++L CTR+Q
Sbjct: 58 EKLETELQQCYKAQSRLSEQLVIEVAESRTSKAILQEKELLINDLQKELTQRREDCTRLQ 117
Query: 397 ELLDDYKTKSAGI 435
E L++ KTK+ +
Sbjct: 118 EELEE-KTKTVDV 129
>At5g35960.1 68418.m04330 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 429
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 113 GNKKMIQSDYPSVMGLLAHLNSNELKEML 199
GN + I D+ S MG++AH+N + ++L
Sbjct: 167 GNSEEIIVDFLSEMGIMAHVNHPNIAKLL 195
>At4g35920.3 68417.m05107 expressed protein contains Pfam profile
PF04749: Protein of unknown function, DUF614; isoform
contains AT-acceptor splice site at intron 8
Length = 421
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 325 ELERMKAELQEKSE-LGEQLCTRIQELLDDYKTKSAGISPDTTHALLQTAAAESEEQSDN 501
E E+++ ELQ E C IQ L+ +A + PD+ L + A+ +SE S
Sbjct: 196 ENEKLQIELQRSQEHYDVAQCEVIQRLI-GVTQAAAAVEPDSEKELTKKASKKSERSSSM 254
Query: 502 IAKTFYLEN 528
+ Y E+
Sbjct: 255 KTEYSYDED 263
>At4g35920.2 68417.m05106 expressed protein contains Pfam profile
PF04749: Protein of unknown function, DUF614; isoform
contains AT-acceptor splice site at intron 8
Length = 421
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 325 ELERMKAELQEKSE-LGEQLCTRIQELLDDYKTKSAGISPDTTHALLQTAAAESEEQSDN 501
E E+++ ELQ E C IQ L+ +A + PD+ L + A+ +SE S
Sbjct: 196 ENEKLQIELQRSQEHYDVAQCEVIQRLI-GVTQAAAAVEPDSEKELTKKASKKSERSSSM 254
Query: 502 IAKTFYLEN 528
+ Y E+
Sbjct: 255 KTEYSYDED 263
>At4g35920.1 68417.m05105 expressed protein contains Pfam profile
PF04749: Protein of unknown function, DUF614; isoform
contains AT-acceptor splice site at intron 8
Length = 421
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 325 ELERMKAELQEKSE-LGEQLCTRIQELLDDYKTKSAGISPDTTHALLQTAAAESEEQSDN 501
E E+++ ELQ E C IQ L+ +A + PD+ L + A+ +SE S
Sbjct: 196 ENEKLQIELQRSQEHYDVAQCEVIQRLI-GVTQAAAAVEPDSEKELTKKASKKSERSSSM 254
Query: 502 IAKTFYLEN 528
+ Y E+
Sbjct: 255 KTEYSYDED 263
>At3g54170.1 68416.m05988 FKBP12 interacting protein (FIP37)
identical to FKBP12 interacting protein (FIP37)
GI:3859944 from [Arabidopsis thaliana]
Length = 330
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 316 KEPELERMKAELQEKSELGEQLCTRIQELLDDYKTKSAG 432
KE E+ER+K L+ SEL + E+ +D K + AG
Sbjct: 290 KEKEIERVKKGLEIVSELVGDKKDEVDEIDEDAKEEIAG 328
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,277,428
Number of Sequences: 28952
Number of extensions: 169960
Number of successful extensions: 558
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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