Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00538
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   2.6  
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch...    27   2.6  
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    27   3.5  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   4.6  

>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = -3

Query: 440 PPDVCLMTNTKASPNFDALTEMLSIVMYGMDTLKASFTSAYHTTLIFVTSIVPRFPESLD 261
           PPD  +  N  ++ + + L E +   +     +  SFT++ ++++  V S +   P SL+
Sbjct: 3   PPDDQINNNVGSNSHLEKLKEAMDHQLQKSSKIVGSFTNSQNSSVGSVHSPILESPTSLN 62

Query: 260 R 258
           R
Sbjct: 63  R 63


>SPAC25B8.15c |||wybutosine biosynthesis protein
           Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 237

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +1

Query: 334 EAFNVSMPYITIDSISVRASKFGEALVFVIRQTSGGYVLGFRADPRDRLPPLLSELQTPI 513
           +  N    ++T  S S R S + +       +  GGY L       + LPP+L + +   
Sbjct: 43  DVINSHPDWVTTSSCSGRISVYVQG---ANSRKGGGYWLFVSHQAHEELPPVLEDEKVEY 99

Query: 514 ELIPRNPYLGSK 549
             +P +P  G++
Sbjct: 100 GKVPSSPVEGNR 111


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 440 VMCSVSGRTRGIGCLHCCLNSKHPS 514
           VM S SG T  + C +CC   +HPS
Sbjct: 81  VMDSESGLTASVACCNCC---RHPS 102


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +1

Query: 145 YSEDSYHQFAVINPITHASYVIKATLDKYSA*RTQYLN---LSSDS 273
           +S D Y +F  I+P +  S+ +   LD+       Y N   LSS+S
Sbjct: 108 WSPDEYFKFVAIHPYSKTSFPVSYDLDELDTMWLTYYNEFQLSSNS 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,052
Number of Sequences: 5004
Number of extensions: 55822
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)