Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00538
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0339 - 24513699-24516827                                         30   1.6  
12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167...    29   3.6  
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172...    29   3.6  
02_01_0453 + 3255106-3256062,3256140-3256301,3256394-3256762           29   3.6  
12_02_0590 - 20853040-20853081,20853694-20853918,20854995-208558...    28   6.4  

>04_04_0339 - 24513699-24516827
          Length = 1042

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/55 (32%), Positives = 31/55 (56%)
 Frame = -2

Query: 222  KSSFYHV*GMCYWIYNSKLMIAVFTVLSLLVVPQYPKFDYN*LKLFISSNIIMVL 58
            K SF+H+  +  W+ + +   A+F  L  L + Q PKF    +KL +  ++IM+L
Sbjct: 869  KLSFFHMRNLEIWLPSQRE--AIFPNLQELTITQCPKFRAVHVKLPVVKSLIMLL 921


>12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,
            1676103-1676206,1676321-1676479,1676768-1676894,
            1677569-1677736,1677890-1678000,1678090-1678243,
            1678409-1678744,1678854-1679038,1679141-1679239,
            1679376-1679639,1679776-1679952,1680351-1680644,
            1680753-1680920,1681574-1681918,1682002-1682171,
            1682272-1682422,1683296-1683365,1683456-1683640,
            1683999-1684092,1684195-1684313,1684658-1684717,
            1684844-1684930,1685631-1685717,1685905-1686013,
            1686105-1686183,1686350-1686437,1686611-1686675,
            1687570-1687722,1688514-1688620,1688702-1688784,
            1688926-1689016,1689095-1689231,1689612-1689701,
            1689795-1689962,1690366-1690560
          Length = 1809

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/55 (21%), Positives = 30/55 (54%)
 Frame = +1

Query: 277  NLGTMLVTNIRVVWYADVNEAFNVSMPYITIDSISVRASKFGEALVFVIRQTSGG 441
            +L T+ + ++ +   +D NE  N+ +PY+  + I  + S   +A + ++ + + G
Sbjct: 1159 SLLTVRLCDVSLTTSSDANETMNIVLPYLLSEGILSKVSSVQKASISLVMKLAKG 1213


>11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,
            1721996-1722099,1722214-1722372,1722668-1722794,
            1723469-1723636,1723789-1723899,1723989-1724142,
            1724308-1724643,1724753-1724937,1725040-1725138,
            1725275-1725538,1725674-1725850,1726249-1726542,
            1726649-1726816,1727473-1727817,1727901-1728070,
            1728171-1728321,1729193-1729262,1729353-1729537,
            1729896-1729989,1730094-1730212,1730558-1730617,
            1730744-1730830,1732348-1732434,1732622-1732730,
            1732822-1732900,1733067-1733154,1733328-1733392,
            1734287-1734439,1735231-1735337,1735419-1735501,
            1735643-1735733,1735812-1735948,1736118-1736207,
            1736301-1736468,1736875-1737057
          Length = 1805

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/55 (21%), Positives = 30/55 (54%)
 Frame = +1

Query: 277  NLGTMLVTNIRVVWYADVNEAFNVSMPYITIDSISVRASKFGEALVFVIRQTSGG 441
            +L T+ + ++ +   +D NE  N+ +PY+  + I  + S   +A + ++ + + G
Sbjct: 1155 SLLTVRLCDVSLTTSSDANETMNIVLPYLLSEGILSKVSSVQKASISLVMKLAKG 1209


>02_01_0453 + 3255106-3256062,3256140-3256301,3256394-3256762
          Length = 495

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 544 SKLTGRMRLQLQSMMRLKS*KR*ENLEGRWGQVYIWHLNWPN 669
           S L   +RLQ+ S++ LKS  R   L  RW    +W   WP+
Sbjct: 24  SDLPDALRLQILSLLPLKSAIRTGALSSRWRG--LWEQRWPD 63


>12_02_0590 -
           20853040-20853081,20853694-20853918,20854995-20855886,
           20856120-20856122,20856284-20856513
          Length = 463

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 449 SVSGRTRGIGCLHCCLNSKHP 511
           +V GR +G G + CC+  K P
Sbjct: 38  AVGGRAKGFGVVRCCVQEKKP 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,188,792
Number of Sequences: 37544
Number of extensions: 352724
Number of successful extensions: 673
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)