Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00538
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   4e-22
SB_58712| Best HMM Match : Extensin_2 (HMM E-Value=2.7)                28   6.5  
SB_1138| Best HMM Match : CUB (HMM E-Value=0)                          28   8.6  

>SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 751

 Score =  101 bits (243), Expect = 4e-22
 Identities = 44/92 (47%), Positives = 65/92 (70%)
 Frame = +1

Query: 268 DSGNLGTMLVTNIRVVWYADVNEAFNVSMPYITIDSISVRASKFGEALVFVIRQTSGGYV 447
           D GNLGT  +TN+R+VW+A++N+ FNVS+PY+ + ++ +R SKFG ALV    Q SGGYV
Sbjct: 73  DKGNLGTFYITNVRLVWHANMNDTFNVSIPYLQMKTVRIRDSKFGLALVVETSQQSGGYV 132

Query: 448 LGFRADPRDRLPPLLSELQTPIELIPRNPYLG 543
           LGFR DP ++L   + E+Q+  ++   +P  G
Sbjct: 133 LGFRVDPVEKLQEAVKEIQSLQKVYSASPIFG 164


>SB_58712| Best HMM Match : Extensin_2 (HMM E-Value=2.7)
          Length = 349

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -2

Query: 315 YNSDIRYQHRAKIPGVARQIQILCSLSRIFVKSSFYHV*GMCYWIYNS 172
           YNS  R  H+A + GV    +++   SR   K++ Y V      +Y+S
Sbjct: 239 YNSSTRNTHKATLYGVYNTTELVYDSSRNTHKATLYSVYNTTKLVYDS 286


>SB_1138| Best HMM Match : CUB (HMM E-Value=0)
          Length = 499

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 596 FNLIIDCSWSLILPVN 549
           ++ IIDC+W + LPVN
Sbjct: 184 YSSIIDCTWKITLPVN 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,406,656
Number of Sequences: 59808
Number of extensions: 418566
Number of successful extensions: 826
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)