Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00538
         (712 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC044593-1|AAH44593.1|  341|Homo sapiens BBS5 protein protein.        109   1e-23
AY604003-1|AAT08182.1|  341|Homo sapiens Bardet-Biedl syndrome p...   109   1e-23
AC093899-1|AAY24116.1|  341|Homo sapiens unknown protein.             109   1e-23
AY604004-1|AAT08183.1|  320|Homo sapiens Bardet-Biedl syndrome p...    73   1e-12

>BC044593-1|AAH44593.1|  341|Homo sapiens BBS5 protein protein.
          Length = 341

 Score =  109 bits (262), Expect = 1e-23
 Identities = 49/96 (51%), Positives = 69/96 (71%)
 Frame = +1

Query: 256 NLSSDSGNLGTMLVTNIRVVWYADVNEAFNVSMPYITIDSISVRASKFGEALVFVIRQTS 435
           NLSSD GNLGT  +TN+R+VW+A++N++FNVS+PY+ I SI +R SKFG ALV    Q S
Sbjct: 169 NLSSDQGNLGTFFITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQS 228

Query: 436 GGYVLGFRADPRDRLPPLLSELQTPIELIPRNPYLG 543
           GGYVLGF+ DP ++L   + E+ +  ++   +P  G
Sbjct: 229 GGYVLGFKIDPVEKLQESVKEINSLHKVYSASPIFG 264



 Score = 35.1 bits (77), Expect = 0.25
 Identities = 15/42 (35%), Positives = 28/42 (66%)
 Frame = +1

Query: 268 DSGNLGTMLVTNIRVVWYADVNEAFNVSMPYITIDSISVRAS 393
           ++G+ G +LVTN+R++W++      NVS+ Y  I +I+ R +
Sbjct: 43  NNGDRGRLLVTNLRILWHSLALSRVNVSVGYNCILNITTRTA 84


>AY604003-1|AAT08182.1|  341|Homo sapiens Bardet-Biedl syndrome
           protein 5 isoform 1 protein.
          Length = 341

 Score =  109 bits (262), Expect = 1e-23
 Identities = 49/96 (51%), Positives = 69/96 (71%)
 Frame = +1

Query: 256 NLSSDSGNLGTMLVTNIRVVWYADVNEAFNVSMPYITIDSISVRASKFGEALVFVIRQTS 435
           NLSSD GNLGT  +TN+R+VW+A++N++FNVS+PY+ I SI +R SKFG ALV    Q S
Sbjct: 169 NLSSDQGNLGTFFITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQS 228

Query: 436 GGYVLGFRADPRDRLPPLLSELQTPIELIPRNPYLG 543
           GGYVLGF+ DP ++L   + E+ +  ++   +P  G
Sbjct: 229 GGYVLGFKIDPVEKLQESVKEINSLHKVYSASPIFG 264



 Score = 35.1 bits (77), Expect = 0.25
 Identities = 15/42 (35%), Positives = 28/42 (66%)
 Frame = +1

Query: 268 DSGNLGTMLVTNIRVVWYADVNEAFNVSMPYITIDSISVRAS 393
           ++G+ G +LVTN+R++W++      NVS+ Y  I +I+ R +
Sbjct: 43  NNGDRGRLLVTNLRILWHSLALSRVNVSVGYNCILNITTRTA 84


>AC093899-1|AAY24116.1|  341|Homo sapiens unknown protein.
          Length = 341

 Score =  109 bits (262), Expect = 1e-23
 Identities = 49/96 (51%), Positives = 69/96 (71%)
 Frame = +1

Query: 256 NLSSDSGNLGTMLVTNIRVVWYADVNEAFNVSMPYITIDSISVRASKFGEALVFVIRQTS 435
           NLSSD GNLGT  +TN+R+VW+A++N++FNVS+PY+ I SI +R SKFG ALV    Q S
Sbjct: 169 NLSSDQGNLGTFFITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQS 228

Query: 436 GGYVLGFRADPRDRLPPLLSELQTPIELIPRNPYLG 543
           GGYVLGF+ DP ++L   + E+ +  ++   +P  G
Sbjct: 229 GGYVLGFKIDPVEKLQESVKEINSLHKVYSASPIFG 264



 Score = 35.1 bits (77), Expect = 0.25
 Identities = 15/42 (35%), Positives = 28/42 (66%)
 Frame = +1

Query: 268 DSGNLGTMLVTNIRVVWYADVNEAFNVSMPYITIDSISVRAS 393
           ++G+ G +LVTN+R++W++      NVS+ Y  I +I+ R +
Sbjct: 43  NNGDRGRLLVTNLRILWHSLALSRVNVSVGYNCILNITTRTA 84


>AY604004-1|AAT08183.1|  320|Homo sapiens Bardet-Biedl syndrome
           protein 5 isoform 2 protein.
          Length = 320

 Score = 72.9 bits (171), Expect = 1e-12
 Identities = 38/96 (39%), Positives = 57/96 (59%)
 Frame = +1

Query: 256 NLSSDSGNLGTMLVTNIRVVWYADVNEAFNVSMPYITIDSISVRASKFGEALVFVIRQTS 435
           NLSSD GNLGT  +TN+R+VW+A++N++FNVS+PY+                     Q S
Sbjct: 169 NLSSDQGNLGTFFITNVRIVWHANMNDSFNVSIPYL---------------------QIS 207

Query: 436 GGYVLGFRADPRDRLPPLLSELQTPIELIPRNPYLG 543
           GGYVLGF+ DP ++L   + E+ +  ++   +P  G
Sbjct: 208 GGYVLGFKIDPVEKLQESVKEINSLHKVYSASPIFG 243



 Score = 35.1 bits (77), Expect = 0.25
 Identities = 15/42 (35%), Positives = 28/42 (66%)
 Frame = +1

Query: 268 DSGNLGTMLVTNIRVVWYADVNEAFNVSMPYITIDSISVRAS 393
           ++G+ G +LVTN+R++W++      NVS+ Y  I +I+ R +
Sbjct: 43  NNGDRGRLLVTNLRILWHSLALSRVNVSVGYNCILNITTRTA 84


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,859,760
Number of Sequences: 237096
Number of extensions: 1992706
Number of successful extensions: 3627
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3627
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)