Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00538
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z31590-7|CAA83463.1|  361|Caenorhabditis elegans Hypothetical pr...   104   5e-23
Z68270-13|CAD21675.1|  225|Caenorhabditis elegans Hypothetical p...    33   0.27 
Z68270-12|CAA92573.1|  205|Caenorhabditis elegans Hypothetical p...    33   0.27 
Z68213-7|CAD21589.1|  225|Caenorhabditis elegans Hypothetical pr...    33   0.27 
Z68213-6|CAA92442.1|  205|Caenorhabditis elegans Hypothetical pr...    33   0.27 
AF202932-1|AAK69382.1|  225|Caenorhabditis elegans ICln2 protein.      33   0.27 
AF202931-1|AAK69381.1|  205|Caenorhabditis elegans ICln1 protein.      33   0.27 
U41037-3|AAA82389.1|  378|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL110478-7|CAB54341.2|  343|Caenorhabditis elegans Hypothetical ...    28   5.7  
U52003-5|AAG00057.1|  730|Caenorhabditis elegans P granule abnor...    28   7.6  
U52003-4|ABB51171.1|  771|Caenorhabditis elegans P granule abnor...    28   7.6  
AF077868-1|AAC36100.1|  730|Caenorhabditis elegans PGL-1 protein.      28   7.6  

>Z31590-7|CAA83463.1|  361|Caenorhabditis elegans Hypothetical
           protein R01H10.6 protein.
          Length = 361

 Score =  104 bits (250), Expect = 5e-23
 Identities = 48/84 (57%), Positives = 64/84 (76%)
 Frame = +1

Query: 256 NLSSDSGNLGTMLVTNIRVVWYADVNEAFNVSMPYITIDSISVRASKFGEALVFVIRQTS 435
           NLS+++G+LG  ++TNIRVVWYA++N  +NVS+PYIT+ S+ VR SKFG ALV     +S
Sbjct: 179 NLSTETGSLGVFVITNIRVVWYAEMNIGYNVSVPYITLYSVRVRESKFGMALVLETTTSS 238

Query: 436 GGYVLGFRADPRDRLPPLLSELQT 507
           G YVLGFR DP +RL  LL  +Q+
Sbjct: 239 GEYVLGFRVDPAERLQNLLKTVQS 262



 Score = 32.3 bits (70), Expect = 0.35
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +1

Query: 268 DSGNLGTMLVTNIRVVWYADVNEAFNVSMPYITIDSI 378
           ++G+ GTM VTN+R++W+A      N+++ +  I  +
Sbjct: 45  NNGDRGTMRVTNLRLIWHAASMPRINITIGWNAITGV 81


>Z68270-13|CAD21675.1|  225|Caenorhabditis elegans Hypothetical
           protein C01F6.8b protein.
          Length = 225

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 268 DSGNLGTMLVTNIRVVWYADV--NEAFNVSMPYITIDSISVRASKFGEALVFVI 423
           DS   GT+ +T+  V+W +     + F+V+ P I + +IS   S F    +FV+
Sbjct: 27  DSLGNGTLYITDSAVIWISSAAGTKGFSVAYPAIVLHAISTDVSVFPSEHIFVM 80


>Z68270-12|CAA92573.1|  205|Caenorhabditis elegans Hypothetical
           protein C01F6.8a protein.
          Length = 205

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 268 DSGNLGTMLVTNIRVVWYADV--NEAFNVSMPYITIDSISVRASKFGEALVFVI 423
           DS   GT+ +T+  V+W +     + F+V+ P I + +IS   S F    +FV+
Sbjct: 27  DSLGNGTLYITDSAVIWISSAAGTKGFSVAYPAIVLHAISTDVSVFPSEHIFVM 80


>Z68213-7|CAD21589.1|  225|Caenorhabditis elegans Hypothetical
           protein C01F6.8b protein.
          Length = 225

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 268 DSGNLGTMLVTNIRVVWYADV--NEAFNVSMPYITIDSISVRASKFGEALVFVI 423
           DS   GT+ +T+  V+W +     + F+V+ P I + +IS   S F    +FV+
Sbjct: 27  DSLGNGTLYITDSAVIWISSAAGTKGFSVAYPAIVLHAISTDVSVFPSEHIFVM 80


>Z68213-6|CAA92442.1|  205|Caenorhabditis elegans Hypothetical
           protein C01F6.8a protein.
          Length = 205

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 268 DSGNLGTMLVTNIRVVWYADV--NEAFNVSMPYITIDSISVRASKFGEALVFVI 423
           DS   GT+ +T+  V+W +     + F+V+ P I + +IS   S F    +FV+
Sbjct: 27  DSLGNGTLYITDSAVIWISSAAGTKGFSVAYPAIVLHAISTDVSVFPSEHIFVM 80


>AF202932-1|AAK69382.1|  225|Caenorhabditis elegans ICln2 protein.
          Length = 225

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 268 DSGNLGTMLVTNIRVVWYADV--NEAFNVSMPYITIDSISVRASKFGEALVFVI 423
           DS   GT+ +T+  V+W +     + F+V+ P I + +IS   S F    +FV+
Sbjct: 27  DSLGNGTLYITDSAVIWISSAAGTKGFSVAYPAIVLHAISTDVSVFPSEHIFVM 80


>AF202931-1|AAK69381.1|  205|Caenorhabditis elegans ICln1 protein.
          Length = 205

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 268 DSGNLGTMLVTNIRVVWYADV--NEAFNVSMPYITIDSISVRASKFGEALVFVI 423
           DS   GT+ +T+  V+W +     + F+V+ P I + +IS   S F    +FV+
Sbjct: 27  DSLGNGTLYITDSAVIWISSAAGTKGFSVAYPAIVLHAISTDVSVFPSEHIFVM 80


>U41037-3|AAA82389.1|  378|Caenorhabditis elegans Hypothetical
           protein T24C12.1 protein.
          Length = 378

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 237 SRIFVKSSFYHV*GMCYWIYNSK--LMIAVFTVLSLLVV 127
           S+IF +S F+   G   W+Y S   L++AVF  L   +V
Sbjct: 61  SKIFPRSCFFMRFGKAAWLYGSNMILLLAVFLFLGATIV 99


>AL110478-7|CAB54341.2|  343|Caenorhabditis elegans Hypothetical
           protein Y26D4A.4 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 575 SWSLILPVNFDPKYGFLGISSMGVW 501
           S S++L   F+P +GF+GI  +  W
Sbjct: 202 SQSVLLTTPFEPDFGFVGIEDVRTW 226


>U52003-5|AAG00057.1|  730|Caenorhabditis elegans P granule
           abnormality protein 1,isoform a protein.
          Length = 730

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 434 DVCLMTNTKASPNFDALTEMLS 369
           DVCL+   K  P FDA  E LS
Sbjct: 79  DVCLLLGDKFRPKFDAAAEKLS 100


>U52003-4|ABB51171.1|  771|Caenorhabditis elegans P granule
           abnormality protein 1,isoform b protein.
          Length = 771

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 434 DVCLMTNTKASPNFDALTEMLS 369
           DVCL+   K  P FDA  E LS
Sbjct: 120 DVCLLLGDKFRPKFDAAAEKLS 141


>AF077868-1|AAC36100.1|  730|Caenorhabditis elegans PGL-1 protein.
          Length = 730

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 434 DVCLMTNTKASPNFDALTEMLS 369
           DVCL+   K  P FDA  E LS
Sbjct: 79  DVCLLLGDKFRPKFDAAAEKLS 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,725,756
Number of Sequences: 27780
Number of extensions: 313219
Number of successful extensions: 726
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)