Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00538
         (712 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative           32   0.43 
At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacu...    29   2.3  
At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacu...    29   2.3  
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA...    29   2.3  
At1g34120.2 68414.m04232 inositol polyphosphate 5-phosphatase I ...    29   3.0  
At1g34120.1 68414.m04231 inositol polyphosphate 5-phosphatase I ...    29   3.0  
At3g57640.1 68416.m06422 protein kinase family protein contains ...    27   9.3  

>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 
          Length = 591

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
 Frame = +1

Query: 247 QYLNLSSDSGNLGTMLVTNI--RVVWYADVNEAFNVSMP-----YITIDSISVRASKFGE 405
           +Y   S  +G    ++ T++  + + + D+    N  MP     Y+     + R  K G 
Sbjct: 437 EYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGI 496

Query: 406 ALVFVIRQTSGGYVLGFR---ADPRDRLPPLLSELQTPIE 516
           A  F+ +  S   +L  +    + + R+PP+L+EL  P+E
Sbjct: 497 ATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPME 536


>At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacum,
           EMBL:AB009883
          Length = 918

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 481 PPLLSELQTPIELIPRNPYLGSKLTGRMR 567
           PP + EL+T I ++P   Y  SKL   +R
Sbjct: 653 PPTMQELRTTIRVLPSQDYYTSKLRNNVR 681


>At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacum,
           EMBL:AB009883
          Length = 918

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 481 PPLLSELQTPIELIPRNPYLGSKLTGRMR 567
           PP + EL+T I ++P   Y  SKL   +R
Sbjct: 653 PPTMQELRTTIRVLPSQDYYTSKLRNNVR 681


>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
           helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
          Length = 542

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
 Frame = +1

Query: 319 YADVNEAFNVSMP-----YITIDSISVRASKFGEALVFVIRQTSGGYVLGFR---ADPRD 474
           + D+    N  MP     Y+     + R  K G A  F+ +  S   +L  +    + + 
Sbjct: 414 FPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQ 473

Query: 475 RLPPLLSELQTPIE 516
           R+PP+L+EL  P+E
Sbjct: 474 RIPPVLAELNGPME 487


>At1g34120.2 68414.m04232 inositol polyphosphate 5-phosphatase I
           (IP5PI) nearly identical to inositol polyphosphate
           5-phosphatase I [Arabidopsis thaliana] GI:10444261
          Length = 590

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 241 RTQYLNLSSDSGNLGTMLVTNIRVVWYADVNEAFNVS 351
           RTQ+L  S ++  L   +  + R++W  D+N   N+S
Sbjct: 424 RTQFLPHSLNANELPRSICNHERIIWLGDLNYRINLS 460


>At1g34120.1 68414.m04231 inositol polyphosphate 5-phosphatase I
           (IP5PI) nearly identical to inositol polyphosphate
           5-phosphatase I [Arabidopsis thaliana] GI:10444261
          Length = 586

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 241 RTQYLNLSSDSGNLGTMLVTNIRVVWYADVNEAFNVS 351
           RTQ+L  S ++  L   +  + R++W  D+N   N+S
Sbjct: 420 RTQFLPHSLNANELPRSICNHERIIWLGDLNYRINLS 456


>At3g57640.1 68416.m06422 protein kinase family protein contains
           similarity to protein kinases
          Length = 356

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 452 VSGRTRGIGCLHCCLNSKHPSSLYR 526
           VSG    +  + CCL S+HP  +YR
Sbjct: 118 VSGHKNFMQLVGCCLESEHPVLVYR 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,812,331
Number of Sequences: 28952
Number of extensions: 289316
Number of successful extensions: 624
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)