Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00537
         (770 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     25   0.51 
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    24   1.5  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    24   1.5  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   6.2  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   8.2  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   8.2  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   8.2  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = -1

Query: 398 ANLVIKPSTDKTNNIHNVSK*QAFFHHFT*YNFKDVGKTIQNLAPHIGSHFR*NTVL 228
           ++ V  P     +   +  K +A F ++  Y+F  +   + +  PH G H   NT L
Sbjct: 402 SSFVTLPQLHSLDEWDDTLKEKADFQYYVSYDFYKMNHPVYHKDPHYGFHNVTNTTL 458


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 17  LPFLSYKLECKNVMCVLLTSLVHYHNKKKPTSVINLCTK 133
           +PF+   +   +V+ +L  S   Y+   KP     +CTK
Sbjct: 146 VPFVELTVAHASVLTILAISFERYYAICKPLKAGYICTK 184


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 17  LPFLSYKLECKNVMCVLLTSLVHYHNKKKPTSVINLCTK 133
           +PF+   +   +V+ +L  S   Y+   KP     +CTK
Sbjct: 146 VPFVELTVAHASVLTILAISFERYYAICKPLKAGYICTK 184


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 259 ICGAKFWMVLPTSLKLYYVKW*KKACHLL 345
           I G  F ++  + LK+Y+ +  +K C +L
Sbjct: 13  IAGFLFLLICDSYLKIYHKEKYRKFCRIL 41


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 627 SLVKLPSNYTIVQKF 671
           +L KLP NY I  KF
Sbjct: 403 TLYKLPPNYEIRHKF 417


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 436 ILCKYHQAYSNEMVFQ 483
           +L KYHQ + ++ +FQ
Sbjct: 10  MLPKYHQQFHHQQLFQ 25


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 436 ILCKYHQAYSNEMVFQ 483
           +L KYHQ + ++ +FQ
Sbjct: 10  MLPKYHQQFHHQQLFQ 25


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,177
Number of Sequences: 336
Number of extensions: 4143
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)