Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00537
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3686| Best HMM Match : Myotub-related (HMM E-Value=2.8e-08)         28   9.6  
SB_42362| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_3686| Best HMM Match : Myotub-related (HMM E-Value=2.8e-08)
          Length = 629

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 205 LDHINIDHKTVF*RK*EPICGA 270
           + H+NI++++V  R  EP+CG+
Sbjct: 226 ISHVNINYESVLMRSGEPLCGS 247


>SB_42362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 612 FISKVTFGWLIQSLCKSRLMLRDTCLQYYMVAFNLYRHITILYLKN 475
           F   +T  WL +  C S L L   C++ Y+  F  Y+H T+   KN
Sbjct: 103 FSLTLTVNWLFR--CVSYLTLIAVCIERYVSLFWTYKH-TVYVTKN 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,988,453
Number of Sequences: 59808
Number of extensions: 429057
Number of successful extensions: 852
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)