Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00536
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    32   0.086
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    27   1.9  
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p...    27   3.3  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    26   5.7  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    26   5.7  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    26   5.7  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   7.5  

>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 31.9 bits (69), Expect = 0.086
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 286 VFYPQFRCICVEGMLDVGTVSNVGKQKHELF 378
           + Y +F  IC+EG++    VSN+   KHE+F
Sbjct: 619 IMYTKFDSICLEGIVGYQRVSNMCHGKHEVF 649


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 142 FDTTHRFFSHYFDLLNHYEISSKN 71
           F T+ RF +H F  LN Y +  KN
Sbjct: 121 FTTSARFINHLFGYLNRYWVKLKN 144


>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -1

Query: 575 YYFNGYNLLGSIVHAFKHLAEGTLPIFSCFVKISSGSTFSLKAITLAGLLLRPTFS 408
           Y  NG  +L ++ +A  + A+  L +      + S S FSL  +     L R  FS
Sbjct: 200 YGLNGEEVLDNVAYARAYNADHQLELLQQAANMMSESRFSLLVVDSCTALYRTDFS 255


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 181 RLTSYRHFIIIFDFDTTHRFFSHYFDLLNHYEISSKNDIK 62
           RL  +R F +I         FS +F+L++H+ I S  ++K
Sbjct: 278 RLYEFRRFGLI-GLSNFVNSFSSFFELISHFLIKSAQNLK 316


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 215 KKPTFLRWVNSTSN*LQTLYNYFRL*HYS*IFFTLL 108
           K PTF+R  N  +      Y Y R  HY+  FF  L
Sbjct: 359 KNPTFIRCANGGTLLTSGWYRYARKIHYTADFFQSL 394


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 262 LTLPKL-KHLTESQLTEKNQHSSGGLTARLTSYR 164
           L+ P L  HL+ S L +    SSGGL++  +S R
Sbjct: 454 LSQPSLANHLSSSGLFDNGLFSSGGLSSNFSSLR 487


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 377 NSSCFCFPTLETVPTSSIPSTQI 309
           N+ C+C    +T P SS+PS  I
Sbjct: 370 NAKCYCGLHSKTYPCSSLPSPSI 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,614,694
Number of Sequences: 5004
Number of extensions: 53893
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)