Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00536
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493...    33   0.21 
01_01_0790 + 6135910-6136045,6136316-6136497,6136604-6136749,613...    30   1.9  
04_04_1113 - 30986757-30986780,30986781-30987273,30987437-309879...    28   7.8  

>01_06_0102 -
           26447286-26448107,26448248-26448385,26448990-26449359,
           26449505-26449606,26449696-26449788,26449934-26450181,
           26451088-26451274,26451825-26452043,26452464-26452660,
           26453545-26453875,26454099-26454457,26455141-26455240,
           26455349-26455464,26455547-26455663,26455782-26455880,
           26456057-26456131,26456205-26456286,26457724-26457763,
           26458685-26458769,26458924-26459055
          Length = 1303

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = +1

Query: 199 RNVGFFQ*VVIRSGVLVLVKLKFCSCAVSVFYPQFRCICVEGMLD----VGTVSNVGKQK 366
           R +G    V +R GVL LV    C+ A+S+ +P  RC C+    D    V   + +G++ 
Sbjct: 776 RPIGPLVVVGVRDGVLWLVDRYMCAHALSLSHPGIRCRCLAAYGDPVSAVKWATRLGREH 835

Query: 367 HE 372
           H+
Sbjct: 836 HD 837


>01_01_0790 +
           6135910-6136045,6136316-6136497,6136604-6136749,
           6136836-6137103,6137256-6137558,6137657-6137905
          Length = 427

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 361 VFQHWKQSRHLAFPRHKYI*TEDRRHS 281
           VFQ W Q R LA+ +HK++ +   RH+
Sbjct: 107 VFQPWIQKRKLAYAKHKHVISGILRHA 133


>04_04_1113 -
           30986757-30986780,30986781-30987273,30987437-30987959,
           30988361-30988615,30988812-30988926,30989026-30989078,
           30989213-30989265,30989419-30989473,30989549-30989599,
           30989776-30990024,30990122-30990350,30990994-30991305
          Length = 803

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 488 FVKISSGSTFSLKAIT-LAGLLLRPTFSIYLFTMCIKTNSSCFCFPTLETVPTS 330
           F  I SG  + +  I  LA L+   T +  +F  C+K + +  CFP L+ + TS
Sbjct: 368 FSSIPSGVFWPVFLIANLAALIASRTMTTAIF-QCLKQSIALGCFPRLKIIHTS 420


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,014,756
Number of Sequences: 37544
Number of extensions: 310769
Number of successful extensions: 681
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)