Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00536
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   8e-05
SB_54944| Best HMM Match : Gal_Lectin (HMM E-Value=9.5e-05)            31   0.84 
SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)             31   1.1  
SB_30629| Best HMM Match : ERG4_ERG24 (HMM E-Value=0)                  29   2.6  
SB_22062| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_37238| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               28   6.0  
SB_6350| Best HMM Match : Acyl_transf_1 (HMM E-Value=0.87)             28   6.0  
SB_36834| Best HMM Match : Rap_GAP (HMM E-Value=0.00045)               28   7.9  

>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 23/51 (45%), Positives = 26/51 (50%)
 Frame = +3

Query: 504 QSSFGEVFKGVDNRTQQVVXXXXXXXXXXXXXXXXXXXXXMVLSQCDSPYV 656
           + SFGEVFKG+DNRT +VV                      VLSQCDS YV
Sbjct: 820 KGSFGEVFKGIDNRTNEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSLYV 870


>SB_54944| Best HMM Match : Gal_Lectin (HMM E-Value=9.5e-05)
          Length = 392

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 430 SYSVRPSQFIYSRCVSKQIVHAFVFQHWKQSRH 332
           SY    S  ++SRC+ KQ+ H  +  H   SRH
Sbjct: 31  SYEKDTSALVFSRCLIKQLTHQLMRPHSTVSRH 63


>SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)
          Length = 489

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +3

Query: 222 SCDSVRCFSFGKVKILFMRSECLLSSVQMYLCRGNARCRDCF-QCWKTKA*TIC 380
           SC S++C+S  K   +     C L   +  LC  + R  DCF +C       +C
Sbjct: 395 SCRSMKCYSLNKCNQVCEDGRCQLMLCKSDLCVQDCRGADCFMECRARNCTQLC 448


>SB_30629| Best HMM Match : ERG4_ERG24 (HMM E-Value=0)
          Length = 486

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 192 PPEECWFFSVSCDSVRCF--SFGKVKILFMRSECLLSSV 302
           PP   WFF +SC+S  C   + G+V I  ++   LLS V
Sbjct: 74  PPLFVWFFWLSCNSYECSLRTMGEVLISHIQEGTLLSYV 112


>SB_22062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 383 KTNSSCFCFPTLETVPTSSIPSTQ 312
           KT++ C   P+L T+PT S+ ST+
Sbjct: 250 KTDNQCTNTPSLSTLPTDSVSSTE 273


>SB_37238| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1003

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 370 ELFVLIHIVNK*IEKVG--RSKSPARVMAFSEKVDPELIFTKQEKIGKVPSARCLKA 534
           E +VL+    + IE +G  +SK P   +   E +DP L ++ Q++ G +   RC  A
Sbjct: 533 EFYVLVPKGIRAIENLGCFKSKGPNTTLPSLENIDPALQWSYQQRAGAI--LRCADA 587


>SB_6350| Best HMM Match : Acyl_transf_1 (HMM E-Value=0.87)
          Length = 721

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 213 FSVSCDSVRCFSFGKVKILFMRSECLLSSVQMYLCRGNARCRDCFQCWKT 362
           FS S  S+   S     +  + S C+L   ++YLC G  R  + F+ + T
Sbjct: 411 FSRSRSSMVSLSVATAPLQLLDSFCVLLDYRVYLCHGPHRQLEAFKIFNT 460


>SB_36834| Best HMM Match : Rap_GAP (HMM E-Value=0.00045)
          Length = 545

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 100 LNHYEISSKNDIKRVNYHRGPSNRDELA 17
           LNHYE   K   + V YH+ PS  +E A
Sbjct: 398 LNHYEERDKCIERIVQYHKQPSTFEEFA 425


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,140,718
Number of Sequences: 59808
Number of extensions: 395235
Number of successful extensions: 924
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)