Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00536
         (671 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001630-1|AAN71385.1|  642|Drosophila melanogaster RE38276p pro...    55   8e-08
AE014297-2311|AAF55388.1|  642|Drosophila melanogaster CG5169-PA...    55   8e-08
AF177386-1|AAD51369.1| 3584|Drosophila melanogaster huntingtin h...    29   7.6  
AF147779-1|AAF03256.1| 3583|Drosophila melanogaster Huntington d...    29   7.6  
AF146362-1|AAF03255.1| 3583|Drosophila melanogaster Huntington d...    29   7.6  
AE014297-4258|AAF56808.1| 3583|Drosophila melanogaster CG9995-PA...    29   7.6  

>BT001630-1|AAN71385.1|  642|Drosophila melanogaster RE38276p
           protein.
          Length = 642

 Score = 55.2 bits (127), Expect = 8e-08
 Identities = 29/58 (50%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = +3

Query: 489 TREDR--QSSFGEVFKGVDNRTQQVVXXXXXXXXXXXXXXXXXXXXXMVLSQCDSPYV 656
           T+++R  + SFGEVFKG+DNRTQQVV                     MVLSQCDSPYV
Sbjct: 14  TKQERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIDDIQQEIMVLSQCDSPYV 71



 Score = 40.7 bits (91), Expect = 0.002
 Identities = 17/21 (80%), Positives = 21/21 (100%)
 Frame = +1

Query: 445 MAFSEKVDPELIFTKQEKIGK 507
           M+++EKVDPELIFTKQE+IGK
Sbjct: 1   MSWTEKVDPELIFTKQERIGK 21


>AE014297-2311|AAF55388.1|  642|Drosophila melanogaster CG5169-PA
           protein.
          Length = 642

 Score = 55.2 bits (127), Expect = 8e-08
 Identities = 29/58 (50%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = +3

Query: 489 TREDR--QSSFGEVFKGVDNRTQQVVXXXXXXXXXXXXXXXXXXXXXMVLSQCDSPYV 656
           T+++R  + SFGEVFKG+DNRTQQVV                     MVLSQCDSPYV
Sbjct: 14  TKQERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIDDIQQEIMVLSQCDSPYV 71



 Score = 40.7 bits (91), Expect = 0.002
 Identities = 17/21 (80%), Positives = 21/21 (100%)
 Frame = +1

Query: 445 MAFSEKVDPELIFTKQEKIGK 507
           M+++EKVDPELIFTKQE+IGK
Sbjct: 1   MSWTEKVDPELIFTKQERIGK 21


>AF177386-1|AAD51369.1| 3584|Drosophila melanogaster huntingtin
            homolog protein.
          Length = 3584

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = -3

Query: 495  LLFREDQLRVDLLTEGHNSGRALTPSDL 412
            L F   QL   L TEGHNSGR    S L
Sbjct: 1970 LFFMHSQLEEALDTEGHNSGRDACQSPL 1997


>AF147779-1|AAF03256.1| 3583|Drosophila melanogaster Huntington
            disease protein homolog protein.
          Length = 3583

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = -3

Query: 495  LLFREDQLRVDLLTEGHNSGRALTPSDL 412
            L F   QL   L TEGHNSGR    S L
Sbjct: 1969 LFFMHSQLEEALDTEGHNSGRDACQSPL 1996


>AF146362-1|AAF03255.1| 3583|Drosophila melanogaster Huntington
            disease protein homolog protein.
          Length = 3583

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = -3

Query: 495  LLFREDQLRVDLLTEGHNSGRALTPSDL 412
            L F   QL   L TEGHNSGR    S L
Sbjct: 1969 LFFMHSQLEEALDTEGHNSGRDACQSPL 1996


>AE014297-4258|AAF56808.1| 3583|Drosophila melanogaster CG9995-PA
            protein.
          Length = 3583

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = -3

Query: 495  LLFREDQLRVDLLTEGHNSGRALTPSDL 412
            L F   QL   L TEGHNSGR    S L
Sbjct: 1969 LFFMHSQLEEALDTEGHNSGRDACQSPL 1996


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,374,032
Number of Sequences: 53049
Number of extensions: 551426
Number of successful extensions: 1300
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2910007350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)