Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00536
(671 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center... 44 7e-05
U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center... 44 7e-05
U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center... 44 7e-05
U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center... 44 7e-05
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass... 29 3.0
U23527-5|AAC46572.2| 915|Caenorhabditis elegans Hypothetical pr... 29 4.0
AF039036-4|AAB94165.1| 331|Caenorhabditis elegans Serpentine re... 28 5.3
Z66520-7|CAA91384.1| 286|Caenorhabditis elegans Hypothetical pr... 28 6.9
AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ... 28 6.9
Z81039-8|CAB02779.2| 225|Caenorhabditis elegans Hypothetical pr... 27 9.2
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position... 27 9.2
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane... 27 9.2
>U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center
kinase family protein1, isoform d protein.
Length = 638
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 489 TREDR--QSSFGEVFKGVDNRTQQVVXXXXXXXXXXXXXXXXXXXXXMVLSQCDSPYV 656
T+++R + SFGEV+KG+DNRT +VV VLSQCDS YV
Sbjct: 20 TKQERIGRGSFGEVYKGIDNRTGRVVAIKIIDLEQAEDEIEDIQQEIQVLSQCDSQYV 77
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +1
Query: 457 EKVDPELIFTKQEKIGK 507
EK+DPE+IFTKQE+IG+
Sbjct: 11 EKLDPEVIFTKQERIGR 27
>U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center
kinase family protein1, isoform b protein.
Length = 651
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 489 TREDR--QSSFGEVFKGVDNRTQQVVXXXXXXXXXXXXXXXXXXXXXMVLSQCDSPYV 656
T+++R + SFGEV+KG+DNRT +VV VLSQCDS YV
Sbjct: 33 TKQERIGRGSFGEVYKGIDNRTGRVVAIKIIDLEQAEDEIEDIQQEIQVLSQCDSQYV 90
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/18 (66%), Positives = 17/18 (94%)
Frame = +1
Query: 454 SEKVDPELIFTKQEKIGK 507
+ K+DPE+IFTKQE+IG+
Sbjct: 23 NSKLDPEVIFTKQERIGR 40
>U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center
kinase family protein1, isoform c protein.
Length = 650
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 489 TREDR--QSSFGEVFKGVDNRTQQVVXXXXXXXXXXXXXXXXXXXXXMVLSQCDSPYV 656
T+++R + SFGEV+KG+DNRT +VV VLSQCDS YV
Sbjct: 33 TKQERIGRGSFGEVYKGIDNRTGRVVAIKIIDLEQAEDEIEDIQQEIQVLSQCDSQYV 90
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/18 (66%), Positives = 17/18 (94%)
Frame = +1
Query: 454 SEKVDPELIFTKQEKIGK 507
+ K+DPE+IFTKQE+IG+
Sbjct: 23 NSKLDPEVIFTKQERIGR 40
>U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center
kinase family protein1, isoform a protein.
Length = 653
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 489 TREDR--QSSFGEVFKGVDNRTQQVVXXXXXXXXXXXXXXXXXXXXXMVLSQCDSPYV 656
T+++R + SFGEV+KG+DNRT +VV VLSQCDS YV
Sbjct: 35 TKQERIGRGSFGEVYKGIDNRTGRVVAIKIIDLEQAEDEIEDIQQEIQVLSQCDSQYV 92
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/19 (63%), Positives = 18/19 (94%)
Frame = +1
Query: 451 FSEKVDPELIFTKQEKIGK 507
+ +K+DPE+IFTKQE+IG+
Sbjct: 24 YIQKLDPEVIFTKQERIGR 42
>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
gene nameprotein 162 protein.
Length = 2643
Score = 29.1 bits (62), Expect = 3.0
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Frame = -1
Query: 611 NIFDFIFGFFQVYYFNGYNLLGSIVHAFKHLAEGTLPIFSCFVKISSGSTFSLKAITLAG 432
+I +F ++Y+F+ +N GSIV +G++ + VK+ + I +
Sbjct: 2202 DIVSLVFNGDEMYFFDKFNSSGSIVRGLVQ-QDGSVVLKDSLVKV-----HPRQKIRVID 2255
Query: 431 LLLRPTFSIYLFTMCIKTNSSC--FCFPT-LETVPT 333
+ S LFT C N C C T E PT
Sbjct: 2256 FDVMDVKSSVLFTACSNNNGGCEHLCITTPSENSPT 2291
>U23527-5|AAC46572.2| 915|Caenorhabditis elegans Hypothetical
protein K09E2.1 protein.
Length = 915
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -1
Query: 482 KISSGSTFSLKAITLAGLLLRPTFSIYLFTMCIKTNSSCFCFPTLETVPTSSIPST 315
K S+ S F+ + + + RP S + T T+S+ TL T T+ +PST
Sbjct: 530 KSSTTSPFATRFVFSTRVTFRPVSSTVVSTKSSTTSSTTTKPTTLSTTTTTQVPST 585
>AF039036-4|AAB94165.1| 331|Caenorhabditis elegans Serpentine
receptor, class h protein204 protein.
Length = 331
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -1
Query: 620 FLLNIFDFIFGFFQVYYFNG-YNLLGSIVHAFKHLAEGTLPIFS 492
F+L +F FIF F + YY G N L IV+A H TL + S
Sbjct: 258 FILPLFYFIFAFLKQYYNQGVINCL--IVNASLHGLVSTLAMLS 299
>Z66520-7|CAA91384.1| 286|Caenorhabditis elegans Hypothetical
protein F49E12.10 protein.
Length = 286
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -1
Query: 632 QHHDFLLNIFDFIFGFFQVYYFNGYN--LLGSIVHAFKHLAEGTLPI 498
+HHDF +F+ +GF + + +G + SI H ++ GT PI
Sbjct: 213 EHHDFHHKVFNECYGFGPLDWLHGTDKTFRKSIEHPRDYVYYGTTPI 259
>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
protein R193.2 protein.
Length = 1853
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 516 RRNFADLLLFREDQLRVDLL-TEGHNSGRALTPSDLLNLFIHDVY 385
+ N+ ++L F QL DLL G SGRALT S +N I Y
Sbjct: 885 QNNWNNILNFTAYQLIPDLLGATGAVSGRALTSSTPINFAIASYY 929
>Z81039-8|CAB02779.2| 225|Caenorhabditis elegans Hypothetical
protein C25D7.10 protein.
Length = 225
Score = 27.5 bits (58), Expect = 9.2
Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Frame = -1
Query: 506 LPIFSCFVKISSGSTFSLKAITLAG-LLLRPTFSIYLFTMCIKTNS-------SCFCFPT 351
L FSCF+ + T L TL L+L P + L NS S F FP
Sbjct: 125 LVYFSCFIIFMN--TGQLVFYTLQNYLVLTPLKMLILLIATSSLNSIFLQILLSIFVFPY 182
Query: 350 LETVPTSSIPSTQIHLN 300
E V S+I S IH N
Sbjct: 183 FEVVTLSTIISFYIHFN 199
>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
protein 4 protein.
Length = 2104
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 298 QFRCICVEGMLDVGTVSNVGKQKHELFVLIH 390
++ C C +G LDVG V GK E L++
Sbjct: 1043 KYTCKCRDGYLDVGAVMGGGKSGRECKELVN 1073
>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
matrix receptor MUP-4 protein.
Length = 2104
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 298 QFRCICVEGMLDVGTVSNVGKQKHELFVLIH 390
++ C C +G LDVG V GK E L++
Sbjct: 1043 KYTCKCRDGYLDVGAVMGGGKSGRECKELVN 1073
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,477,379
Number of Sequences: 27780
Number of extensions: 306313
Number of successful extensions: 865
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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