Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00536
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   3.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.6  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 424 SKSPARVMAFSEKVDPELIFTKQ 492
           +++PARVMA    VD + I  +Q
Sbjct: 313 NENPARVMACMRSVDAKTISVQQ 335


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 424 SKSPARVMAFSEKVDPELIFTKQ 492
           +++PARVMA    VD + I  +Q
Sbjct: 313 NENPARVMACMRSVDAKTISVQQ 335


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -1

Query: 209 PTFLRWVNSTSN*LQTLYNYFRL 141
           P  L+W++   N +++L NY+++
Sbjct: 570 PGNLKWLDIHGNFIESLGNYYKI 592


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,993
Number of Sequences: 438
Number of extensions: 3385
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)