Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00536
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ...    33   0.17 
At1g53210.1 68414.m06031 sodium/calcium exchanger family protein...    31   0.92 
At3g10230.1 68416.m01224 lycopene beta cyclase (LYC) identical t...    29   2.1  
At5g09400.1 68418.m01089 potassium transporter family protein si...    29   2.8  
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein...    29   3.7  
At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putativ...    28   6.5  
At5g59960.1 68418.m07520 expressed protein                             27   8.6  
At5g40100.1 68418.m04864 disease resistance protein (TIR-NBS-LRR...    27   8.6  
At5g08190.1 68418.m00957 TATA-binding protein-associated phospho...    27   8.6  
At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot...    27   8.6  

>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3
           Pfam PF00400: WD domain, G-beta repeats;
          Length = 1327

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +1

Query: 229 IRSGVLVLVKLKFCSCAVSVFYPQFRCICVEGMLD----VGTVSNVGKQKHE 372
           +R GVL L+    C+ A+S+ +P  RC C+    D    V   S +G++ H+
Sbjct: 825 VRDGVLWLIDRYMCAHAISLNHPGIRCRCLAAYGDAVSAVKWASRLGREHHD 876


>At1g53210.1 68414.m06031 sodium/calcium exchanger family protein /
           calcium-binding EF hand family protein contains Pfam
           profiles: PF01699 sodium/calcium exchanger protein,
           PF00036 EF hand
          Length = 585

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 361 VFQHWKQSRHLAFPRHKYI*TEDRRH 284
           VFQ W Q R LAF +HK++ +   RH
Sbjct: 258 VFQPWIQRRRLAFAKHKHVISGILRH 283


>At3g10230.1 68416.m01224 lycopene beta cyclase (LYC) identical to
           lycopene beta cyclase GI:1399183|GB:AAB53337
           [Arabidopsis thaliana]
          Length = 501

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 157 IIIFDFDTTHRFFSHYFDLLNHY 89
           ++  D D T RFF  +FDL  HY
Sbjct: 426 LLKLDLDATRRFFDAFFDLQPHY 448


>At5g09400.1 68418.m01089 potassium transporter family protein
           similar to K+ transporter HAK5 [Arabidopsis thaliana]
           GI:7108597; contains Pfam profile PF02705: K+ potassium
           transporter; KUP/HAK/KT Transporter family member,
           PMID:11500563; Note: possible sequencing error causes a
           frameshift in the 4th exon|15810448|gb|AY056263
          Length = 858

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = -1

Query: 524 HLAEGTLPIFSCFVKISSGSTF--SLKAITLAGLLLRPTFSIYLFTMCIKTNSSCFCFPT 351
           +L E        F     GS F   L    +A L+   T +   F+ CIK +++  CFP 
Sbjct: 399 YLMENHADASQAFFSSVPGSAFWPVLFIANIAALIASRTMTTATFS-CIKQSTALGCFPR 457

Query: 350 LETVPTSSIPSTQIHL 303
           L+ + TS     QI++
Sbjct: 458 LKIIHTSRKFMGQIYI 473


>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 551

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/73 (24%), Positives = 29/73 (39%)
 Frame = +3

Query: 144 SKIIIKCL*LVRRAVNPPEECWFFSVSCDSVRCFSFGKVKILFMRSECLLSSVQMYLCRG 323
           S +++K L    R  +PP+  W    SC      SF        R  C +     +  + 
Sbjct: 144 SNLVLKKLLRGARYFDPPDAGWVSCYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQ 203

Query: 324 NARCRDCFQCWKT 362
            ++  DC+ C KT
Sbjct: 204 CSKGHDCYICKKT 216


>At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putative
           (UBP27) similar to GI:11993494; ubiquitin specific
           protease 66 - Gallus gallus,PID:g3800764
          Length = 494

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = -2

Query: 439 WPGSYSVRPSQFIYSR-----CVSKQIVHAFVFQHWKQSRHLAFP 320
           W  SYS    Q I +R     C+  Q     +F+ +K S H+AFP
Sbjct: 341 WSNSYSHILKQLIIARFPKLLCIQVQRASFNMFEEFKLSGHIAFP 385


>At5g59960.1 68418.m07520 expressed protein
          Length = 359

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 195 PEECWFFSVSCDSVRCFSFGKVKILFMRSE 284
           P  CW F VSC  ++   +  V+++F R E
Sbjct: 327 PSSCWNFVVSC--IKAVLYSIVRLIFSRRE 354


>At5g40100.1 68418.m04864 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1017

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 184 ARLTSYRHFIIIFDFDTTHRFFSHYFDLLNHYEISSKNDIKRV 56
           +R +SY  F+     DT H   SH ++ L    I++  D KR+
Sbjct: 7   SRASSYDVFLSFRGEDTRHSIVSHLYEALTSRGIATFKDDKRL 49


>At5g08190.1 68418.m00957 TATA-binding protein-associated
           phosphoprotein Dr1 protein, putative similar to Dr1
           protein homolog (SP:P49592) [Arabidopsis thaliana];
           similar to TATA-binding protein-associated
           phosphoprotein (Down-regulator of transcription 1) (DR1
           protein) (SP:Q01658) [Homo sapiens]; contains Pfam
           PF00808 : Histone-like transcription factor (CBF/NF-Y)
           and archaeal histone
          Length = 163

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -2

Query: 358 FQHWKQSRHLAFPRHKYI*TEDRRHSLRMNKILTLPKLKHLTESQ--LTEKNQHSSGGLT 185
           F  + +  + A+ +HKY   +D + S++MN    + + +   E Q    E     +GG+T
Sbjct: 84  FGEYVEEVYAAYEQHKYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEARARMNGGVT 143


>At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein
           similar to SP|O35134 DNA-directed RNA polymerase I
           largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
           subunit) (RPA194) {Mus musculus}; contains InterPro
           accession IPR000722: RNA polymerase, alpha subunit
          Length = 1670

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 486 REDQLRVDLLTEGHNSGRALTPSDLLNLFIHDVYQNK 376
           RE    V    E HNS R L PS++ N+  H ++QN+
Sbjct: 283 REKSTEVAAEFEEHNSKRDLLPSEVRNILKH-LWQNE 318


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,352,192
Number of Sequences: 28952
Number of extensions: 267641
Number of successful extensions: 697
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)