Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00535
         (790 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    45   2e-06
AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.    43   9e-06
AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.    43   9e-06
AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.    43   9e-06
AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.    43   9e-06
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    24   0.49 

>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 45.2 bits (102), Expect = 2e-06
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +3

Query: 96  QCISVHVGQAGVQIGNACWE 155
           +CISVHVGQAGVQIGN CW+
Sbjct: 3   ECISVHVGQAGVQIGNPCWD 22



 Score = 41.1 bits (92), Expect = 4e-05
 Identities = 26/68 (38%), Positives = 28/68 (41%)
 Frame = +1

Query: 145 PAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELASTYPVXXXXXXXXXXXXXX 324
           P    T WS AS+   RCP+TR S      ST SS R   AST PV              
Sbjct: 19  PCWDCTVWSMASNRTVRCPRTRRSEAVMTRSTPSSPRLAQASTCPVPCSSIWSRPSSMRC 78

Query: 325 XXAHTDSC 348
             A T SC
Sbjct: 79  APARTASC 86


>AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 43.2 bits (97), Expect = 9e-06
 Identities = 19/34 (55%), Positives = 23/34 (67%)
 Frame = +3

Query: 408 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHS 509
           HYT G E+VD VLD +RK  + C  LQGF + HS
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHS 34



 Score = 30.7 bits (66), Expect = 0.054
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 548 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNS 649
           + ++  +Y  +    +++ P+P+VS  VVEPYN+
Sbjct: 48  ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 81


>AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 43.2 bits (97), Expect = 9e-06
 Identities = 19/34 (55%), Positives = 23/34 (67%)
 Frame = +3

Query: 408 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHS 509
           HYT G E+VD VLD +RK  + C  LQGF + HS
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHS 34



 Score = 30.7 bits (66), Expect = 0.054
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 548 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNS 649
           + ++  +Y  +    +++ P+P+VS  VVEPYN+
Sbjct: 48  ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 81


>AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 43.2 bits (97), Expect = 9e-06
 Identities = 19/34 (55%), Positives = 23/34 (67%)
 Frame = +3

Query: 408 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHS 509
           HYT G E+VD VLD +RK  + C  LQGF + HS
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHS 34



 Score = 30.7 bits (66), Expect = 0.054
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 548 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNS 649
           + ++  +Y  +    +++ P+P+VS  VVEPYN+
Sbjct: 48  ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 81


>AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 43.2 bits (97), Expect = 9e-06
 Identities = 19/34 (55%), Positives = 23/34 (67%)
 Frame = +3

Query: 408 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHS 509
           HYT G E+VD VLD +RK  + C  LQGF + HS
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHS 34



 Score = 30.7 bits (66), Expect = 0.054
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 548 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNS 649
           + ++  +Y  +    +++ P+P+VS  VVEPYN+
Sbjct: 48  ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 81


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.8 bits (49), Expect(2) = 0.49
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 196 CPQTRPSGVETILSTLSSARPELAS 270
           C   RPS ++   ++ S  RP+LA+
Sbjct: 164 CGSARPSRIDVAFASPSICRPDLAA 188



 Score = 21.8 bits (44), Expect(2) = 0.49
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 139 VMPAGSFTAWSTASSLMARCPQTRPSGV 222
           V+ AG F AW TA        +T+P G+
Sbjct: 116 VLLAGDFNAWHTAWG----SERTKPKGI 139


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 864,364
Number of Sequences: 2352
Number of extensions: 17756
Number of successful extensions: 43
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82744797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)