Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00535
(790 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 291 5e-79
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 291 5e-79
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 289 1e-78
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 289 1e-78
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 272 2e-73
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 272 2e-73
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 259 2e-69
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 136 2e-32
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 134 5e-32
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 133 1e-31
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 133 1e-31
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 132 3e-31
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 132 3e-31
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 131 6e-31
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 130 1e-30
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 126 1e-29
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 101 7e-22
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 100 1e-21
At4g14510.1 68417.m02236 expressed protein contains Pfam domain,... 30 2.0
At5g09370.1 68418.m01085 protease inhibitor/seed storage/lipid t... 29 3.5
At3g29160.3 68416.m03654 Snf1-related protein kinase (KIN11) ide... 28 8.1
At3g29160.2 68416.m03653 Snf1-related protein kinase (KIN11) ide... 28 8.1
At3g29160.1 68416.m03652 Snf1-related protein kinase (KIN11) ide... 28 8.1
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 291 bits (713), Expect = 5e-79
Identities = 138/214 (64%), Positives = 158/214 (73%), Gaps = 2/214 (0%)
Frame = +3
Query: 96 QCISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHV 275
+CIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAGKHV
Sbjct: 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHV 62
Query: 276 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 455
PRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRI
Sbjct: 63 PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRI 122
Query: 456 RKLADQCTGLQGFLIFHS--SVEVPALGSLPY*WSVSPLTTARSLNWXXXXXXXXXXXXX 629
RKLAD CTGLQGFL+F++ LGSL + +
Sbjct: 123 RKLADNCTGLQGFLVFNAVGGGTGSGLGSLLL--ERLSVDYGKKSKLGFTVYPSPQVSTS 180
Query: 630 XXXXXXXXXXXXXXXXHSDCAFMVDNEAIYDICR 731
H+D + ++DNEAIYDICR
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICR 214
Score = 69.7 bits (163), Expect = 2e-12
Identities = 37/72 (51%), Positives = 44/72 (61%)
Frame = +2
Query: 548 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXCFHGRQ*SHL*HL 727
+ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+ +
Sbjct: 154 LERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
Query: 728 PRNLDIERPTYT 763
R+L IERPTYT
Sbjct: 214 RRSLSIERPTYT 225
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 291 bits (713), Expect = 5e-79
Identities = 138/214 (64%), Positives = 158/214 (73%), Gaps = 2/214 (0%)
Frame = +3
Query: 96 QCISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHV 275
+CIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAGKHV
Sbjct: 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHV 62
Query: 276 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 455
PRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRI
Sbjct: 63 PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRI 122
Query: 456 RKLADQCTGLQGFLIFHS--SVEVPALGSLPY*WSVSPLTTARSLNWXXXXXXXXXXXXX 629
RKLAD CTGLQGFL+F++ LGSL + +
Sbjct: 123 RKLADNCTGLQGFLVFNAVGGGTGSGLGSLLL--ERLSVDYGKKSKLGFTVYPSPQVSTS 180
Query: 630 XXXXXXXXXXXXXXXXHSDCAFMVDNEAIYDICR 731
H+D + ++DNEAIYDICR
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICR 214
Score = 69.7 bits (163), Expect = 2e-12
Identities = 37/72 (51%), Positives = 44/72 (61%)
Frame = +2
Query: 548 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXCFHGRQ*SHL*HL 727
+ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+ +
Sbjct: 154 LERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
Query: 728 PRNLDIERPTYT 763
R+L IERPTYT
Sbjct: 214 RRSLSIERPTYT 225
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 289 bits (710), Expect = 1e-78
Identities = 138/214 (64%), Positives = 157/214 (73%), Gaps = 2/214 (0%)
Frame = +3
Query: 96 QCISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHV 275
+CIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAGKHV
Sbjct: 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHV 62
Query: 276 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 455
PRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRI
Sbjct: 63 PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRI 122
Query: 456 RKLADQCTGLQGFLIFHS--SVEVPALGSLPY*WSVSPLTTARSLNWXXXXXXXXXXXXX 629
RKLAD CTGLQGFL+F++ LGSL + +
Sbjct: 123 RKLADNCTGLQGFLVFNAVGGGTGSGLGSLLL--ERLSVDYGKKSKLGFTVYPSPQVSTS 180
Query: 630 XXXXXXXXXXXXXXXXHSDCAFMVDNEAIYDICR 731
H+D + ++DNEAIYDICR
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICR 214
Score = 70.1 bits (164), Expect = 2e-12
Identities = 37/72 (51%), Positives = 45/72 (62%)
Frame = +2
Query: 548 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXCFHGRQ*SHL*HL 727
+ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+ +
Sbjct: 154 LERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
Query: 728 PRNLDIERPTYT 763
R+L+IERPTYT
Sbjct: 214 RRSLNIERPTYT 225
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 289 bits (710), Expect = 1e-78
Identities = 138/214 (64%), Positives = 157/214 (73%), Gaps = 2/214 (0%)
Frame = +3
Query: 96 QCISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHV 275
+CIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAGKHV
Sbjct: 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHV 62
Query: 276 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 455
PRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRI
Sbjct: 63 PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRI 122
Query: 456 RKLADQCTGLQGFLIFHS--SVEVPALGSLPY*WSVSPLTTARSLNWXXXXXXXXXXXXX 629
RKLAD CTGLQGFL+F++ LGSL + +
Sbjct: 123 RKLADNCTGLQGFLVFNAVGGGTGSGLGSLLL--ERLSVDYGKKSKLGFTVYPSPQVSTS 180
Query: 630 XXXXXXXXXXXXXXXXHSDCAFMVDNEAIYDICR 731
H+D + ++DNEAIYDICR
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICR 214
Score = 70.1 bits (164), Expect = 2e-12
Identities = 37/72 (51%), Positives = 45/72 (62%)
Frame = +2
Query: 548 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXCFHGRQ*SHL*HL 727
+ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+ +
Sbjct: 154 LERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
Query: 728 PRNLDIERPTYT 763
R+L+IERPTYT
Sbjct: 214 RRSLNIERPTYT 225
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 272 bits (667), Expect = 2e-73
Identities = 130/214 (60%), Positives = 152/214 (71%), Gaps = 2/214 (0%)
Frame = +3
Query: 96 QCISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHV 275
+ IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGAGKHV
Sbjct: 3 EIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGKHV 62
Query: 276 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 455
PRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+GKEIVDL LDR+
Sbjct: 63 PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRV 122
Query: 456 RKLADQCTGLQGFLIFHS--SVEVPALGSLPY*WSVSPLTTARSLNWXXXXXXXXXXXXX 629
RKLAD CTGLQGFL+F++ LGSL + +
Sbjct: 123 RKLADNCTGLQGFLVFNAVGGGTGSGLGSLLL--ERLSVDYGKKSKLGFTIYPSPQVSTA 180
Query: 630 XXXXXXXXXXXXXXXXHSDCAFMVDNEAIYDICR 731
H+D A ++DNEAIYDICR
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICR 214
Score = 73.7 bits (173), Expect = 1e-13
Identities = 40/72 (55%), Positives = 45/72 (62%)
Frame = +2
Query: 548 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXCFHGRQ*SHL*HL 727
+ERLSVDYGKKSKL F IYP+PQVSTAVVEPYNS+ +
Sbjct: 154 LERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDIC 213
Query: 728 PRNLDIERPTYT 763
R+LDIERPTYT
Sbjct: 214 RRSLDIERPTYT 225
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 272 bits (667), Expect = 2e-73
Identities = 130/214 (60%), Positives = 152/214 (71%), Gaps = 2/214 (0%)
Frame = +3
Query: 96 QCISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHV 275
+ IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGAGKHV
Sbjct: 3 EIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGKHV 62
Query: 276 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 455
PRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+GKEIVDL LDR+
Sbjct: 63 PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRV 122
Query: 456 RKLADQCTGLQGFLIFHS--SVEVPALGSLPY*WSVSPLTTARSLNWXXXXXXXXXXXXX 629
RKLAD CTGLQGFL+F++ LGSL + +
Sbjct: 123 RKLADNCTGLQGFLVFNAVGGGTGSGLGSLLL--ERLSVDYGKKSKLGFTIYPSPQVSTA 180
Query: 630 XXXXXXXXXXXXXXXXHSDCAFMVDNEAIYDICR 731
H+D A ++DNEAIYDICR
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICR 214
Score = 73.7 bits (173), Expect = 1e-13
Identities = 40/72 (55%), Positives = 45/72 (62%)
Frame = +2
Query: 548 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXCFHGRQ*SHL*HL 727
+ERLSVDYGKKSKL F IYP+PQVSTAVVEPYNS+ +
Sbjct: 154 LERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDIC 213
Query: 728 PRNLDIERPTYT 763
R+LDIERPTYT
Sbjct: 214 RRSLDIERPTYT 225
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 259 bits (634), Expect = 2e-69
Identities = 122/214 (57%), Positives = 149/214 (69%), Gaps = 2/214 (0%)
Frame = +3
Query: 96 QCISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHV 275
+ IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSET +G+HV
Sbjct: 3 EIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQHV 62
Query: 276 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 455
PRAVF+DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+G+EIVD L+R+
Sbjct: 63 PRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLERL 122
Query: 456 RKLADQCTGLQGFLIFHS--SVEVPALGSLPY*WSVSPLTTARSLNWXXXXXXXXXXXXX 629
RKLAD CTGLQGFL+F++ LGSL + +
Sbjct: 123 RKLADNCTGLQGFLVFNAVGGGTGSGLGSLLL--ERLSVDFGKKSKLGFTIYPSPQVSTA 180
Query: 630 XXXXXXXXXXXXXXXXHSDCAFMVDNEAIYDICR 731
H+D ++DNEAIYDICR
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICR 214
Score = 70.1 bits (164), Expect = 2e-12
Identities = 38/72 (52%), Positives = 45/72 (62%)
Frame = +2
Query: 548 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXCFHGRQ*SHL*HL 727
+ERLSVD+GKKSKL F IYP+PQVSTAVVEPYNS+ +
Sbjct: 154 LERLSVDFGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDIC 213
Query: 728 PRNLDIERPTYT 763
R+LDIERPTY+
Sbjct: 214 RRSLDIERPTYS 225
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 136 bits (329), Expect = 2e-32
Identities = 62/141 (43%), Positives = 89/141 (63%), Gaps = 3/141 (2%)
Frame = +3
Query: 96 QCISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGD---DSFNTFFSETGAG 266
+ + + GQ G QIG+ WE+ C EHGI P G+ +G D + N +++E G
Sbjct: 3 EILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY-----VGNSDLQLERVNVYYNEASCG 57
Query: 267 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVL 446
++VPRA+ +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 58 RYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVL 117
Query: 447 DRIRKLADQCTGLQGFLIFHS 509
D +RK A+ C LQGF + HS
Sbjct: 118 DVVRKEAENCDCLQGFQVCHS 138
Score = 36.7 bits (81), Expect = 0.018
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +2
Query: 548 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNS 649
+ ++ +Y + L F+++P+P+VS VVEPYN+
Sbjct: 152 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNA 185
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 134 bits (325), Expect = 5e-32
Identities = 60/138 (43%), Positives = 87/138 (63%)
Frame = +3
Query: 96 QCISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHV 275
+ + V GQ G QIG+ WE+ C EHG+ P G+ D + N +++E G++V
Sbjct: 3 EILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSA-DLQLERINVYYNEASGGRYV 61
Query: 276 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 455
PRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VLD +
Sbjct: 62 PRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 121
Query: 456 RKLADQCTGLQGFLIFHS 509
RK A+ C LQGF + HS
Sbjct: 122 RKEAENCDCLQGFQVCHS 139
Score = 36.7 bits (81), Expect = 0.018
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +2
Query: 548 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNS 649
+ ++ +Y + L F+++P+P+VS VVEPYN+
Sbjct: 153 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNA 186
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 133 bits (321), Expect = 1e-31
Identities = 60/138 (43%), Positives = 85/138 (61%)
Frame = +3
Query: 96 QCISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHV 275
+ + + GQ G QIG WE+ C EHGI P G+ D + + N +++E G+ V
Sbjct: 3 EILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQL--ERINVYYNEASCGRFV 60
Query: 276 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 455
PRAV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHYT G E++D VLD +
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 456 RKLADQCTGLQGFLIFHS 509
RK A+ C LQGF + HS
Sbjct: 121 RKEAENCDCLQGFQVCHS 138
Score = 36.7 bits (81), Expect = 0.018
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +2
Query: 548 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNS 649
+ ++ +Y + L F+++P+P+VS VVEPYN+
Sbjct: 152 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNA 185
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 133 bits (321), Expect = 1e-31
Identities = 60/138 (43%), Positives = 85/138 (61%)
Frame = +3
Query: 96 QCISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHV 275
+ + + GQ G QIG WE+ C EHGI P G+ D + + N +++E G+ V
Sbjct: 3 EILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQL--ERINVYYNEASCGRFV 60
Query: 276 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 455
PRAV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHYT G E++D VLD +
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 456 RKLADQCTGLQGFLIFHS 509
RK A+ C LQGF + HS
Sbjct: 121 RKEAENCDCLQGFQVCHS 138
Score = 36.7 bits (81), Expect = 0.018
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +2
Query: 548 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNS 649
+ ++ +Y + L F+++P+P+VS VVEPYN+
Sbjct: 152 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNA 185
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 132 bits (319), Expect = 3e-31
Identities = 61/138 (44%), Positives = 86/138 (62%)
Frame = +3
Query: 96 QCISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHV 275
+ + + GQ G QIG WE+ C EHGI GQ D + + N +F+E GK+V
Sbjct: 3 EILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQL--ERINVYFNEASGGKYV 60
Query: 276 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 455
PRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD +
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 456 RKLADQCTGLQGFLIFHS 509
RK A+ C LQGF + HS
Sbjct: 121 RKEAENCDCLQGFQVCHS 138
Score = 35.9 bits (79), Expect = 0.031
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +2
Query: 548 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNS 649
+ ++ +Y + + F+++P+P+VS VVEPYN+
Sbjct: 152 ISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNA 185
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 678 HSDCAFMVDNEAIYDICRVISTLS-AQPTQPESSH 779
++D ++DNEA+YDIC TL A PT + +H
Sbjct: 195 NADECMVLDNEALYDIC--FRTLKLANPTFGDLNH 227
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 132 bits (318), Expect = 3e-31
Identities = 59/138 (42%), Positives = 87/138 (63%)
Frame = +3
Query: 96 QCISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHV 275
+ + + GQ G QIG+ WE+ C EHGI G+ D T + N +++E G++V
Sbjct: 3 EILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGD-TADLQLERINVYYNEASGGRYV 61
Query: 276 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 455
PRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD +
Sbjct: 62 PRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 121
Query: 456 RKLADQCTGLQGFLIFHS 509
RK A+ C LQGF + HS
Sbjct: 122 RKEAENCDCLQGFQVCHS 139
Score = 36.7 bits (81), Expect = 0.018
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +2
Query: 548 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNS 649
+ ++ +Y + L F+++P+P+VS VVEPYN+
Sbjct: 153 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNA 186
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 131 bits (316), Expect = 6e-31
Identities = 60/138 (43%), Positives = 87/138 (63%)
Frame = +3
Query: 96 QCISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHV 275
+ + + GQ G QIG+ WE+ LEHGI G+ D + + N +++E G++V
Sbjct: 3 EILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQL--ERVNVYYNEASCGRYV 60
Query: 276 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 455
PRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VLD +
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 456 RKLADQCTGLQGFLIFHS 509
RK A+ C LQGF + HS
Sbjct: 121 RKEAENCDCLQGFQVCHS 138
Score = 35.9 bits (79), Expect = 0.031
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +2
Query: 548 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNS 649
+ ++ +Y + + F+++P+P+VS VVEPYN+
Sbjct: 152 ISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNA 185
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 130 bits (314), Expect = 1e-30
Identities = 59/138 (42%), Positives = 85/138 (61%)
Frame = +3
Query: 96 QCISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHV 275
+ + + GQ G QIG WE+ C EHGI G+ + + + N +++E G+ V
Sbjct: 3 EILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQL--ERVNVYYNEASCGRFV 60
Query: 276 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 455
PRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VLD +
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 456 RKLADQCTGLQGFLIFHS 509
RK A+ C LQGF + HS
Sbjct: 121 RKEAENCDCLQGFQVCHS 138
Score = 36.7 bits (81), Expect = 0.018
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +2
Query: 548 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNS 649
+ ++ +Y + L F+++P+P+VS VVEPYN+
Sbjct: 152 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNA 185
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 126 bits (305), Expect = 1e-29
Identities = 59/138 (42%), Positives = 85/138 (61%)
Frame = +3
Query: 96 QCISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHV 275
+ + + GQ G QIG WE+ C EHGI GQ D + + + +F+E GK+V
Sbjct: 3 EILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQL--ERIDVYFNEASGGKYV 60
Query: 276 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 455
PRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD +
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 456 RKLADQCTGLQGFLIFHS 509
RK A+ LQGF + HS
Sbjct: 121 RKEAENSDCLQGFQVCHS 138
Score = 35.9 bits (79), Expect = 0.031
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +2
Query: 548 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNS 649
+ ++ +Y + + F+++P+P+VS VVEPYN+
Sbjct: 152 ISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNA 185
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 678 HSDCAFMVDNEAIYDICRVISTLS-AQPTQPESSH 779
++D ++DNEA+YDIC TL A PT + +H
Sbjct: 195 NADECMVLDNEALYDIC--FRTLKLANPTFGDLNH 227
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 101 bits (241), Expect = 7e-22
Identities = 52/140 (37%), Positives = 81/140 (57%), Gaps = 2/140 (1%)
Frame = +3
Query: 96 QCISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHV 275
+ I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF + ++
Sbjct: 4 EIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHYI 61
Query: 276 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVLD 449
PRA+ +DLEP V++ ++ G YR L++ E + A NN+A G++ GK + + ++D
Sbjct: 62 PRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYHQ-GKGVEEEIMD 120
Query: 450 RIRKLADQCTGLQGFLIFHS 509
I + AD L+GF++ HS
Sbjct: 121 MIDREADGSDSLEGFVLCHS 140
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 548 MERLSVDYGKKSKLEFAIYPAP-QVSTAVVEPYNSI 652
+E L+ Y KK ++++P + S VV+PYNS+
Sbjct: 154 LETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSL 189
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 100 bits (240), Expect = 1e-21
Identities = 52/140 (37%), Positives = 81/140 (57%), Gaps = 2/140 (1%)
Frame = +3
Query: 96 QCISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHV 275
+ I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF + ++
Sbjct: 4 EIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHYI 61
Query: 276 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVLD 449
PRA+ +DLEP V++ ++ G YR L++ E + A NN+A G++ GK + + ++D
Sbjct: 62 PRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYHQ-GKGVEEEIMD 120
Query: 450 RIRKLADQCTGLQGFLIFHS 509
I + AD L+GF++ HS
Sbjct: 121 MIDREADGSDSLEGFVLCHS 140
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 548 MERLSVDYGKKSKLEFAIYPAP-QVSTAVVEPYNSI 652
+E L+ Y KK ++++P + S VV+PYNS+
Sbjct: 154 LETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSL 189
>At4g14510.1 68417.m02236 expressed protein contains Pfam domain,
PF04581: Protein of unknown function (DUF578)
Length = 932
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 168 EHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVD 317
E GIQ +G + ++ + G D +T F + A P FV+L+ +D
Sbjct: 881 EGGIQANGSL-SETDVEFGSDESDTDFGDNSASSTTPETTFVELQNEELD 929
>At5g09370.1 68418.m01085 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to lipid
transfer protein - Hordeum vulgare, EMBL:AF109195;
contains Pfam protease inhibitor/seed storage/LTP family
domain PF00234
Length = 158
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -1
Query: 259 PVSLKKVLKESSPPPMVLSVGIWPSGWMPCSRQ*SSQQALPI 134
PVS L +SPP +W SGW P +PI
Sbjct: 101 PVSACDSLPPASPPTANGQAPVWGSGWAPAPSPSKGNSLIPI 142
>At3g29160.3 68416.m03654 Snf1-related protein kinase (KIN11)
identical to protein kinase AKin11 GI:1729444 from
[Arabidopsis thaliana]
Length = 359
Score = 27.9 bits (59), Expect = 8.1
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Frame = +3
Query: 156 LYCLEHGIQP--DGQMPT-DKTIGGGDDSFNTFFSETGAGKHVPRAVFVD-LEPTVVDEV 323
LY L G P D +P K I GG + + S A +PR + VD ++ + E+
Sbjct: 208 LYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSE-ARDLIPRMLIVDPVKRITIPEI 266
Query: 324 RTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 452
R + Q P L D + + I +E+V++ DR
Sbjct: 267 RQHRWFQTHLPRYLAVSPPDTVEQAKKINEEIVQEVVNMGFDR 309
>At3g29160.2 68416.m03653 Snf1-related protein kinase (KIN11)
identical to protein kinase AKin11 GI:1729444 from
[Arabidopsis thaliana]
Length = 512
Score = 27.9 bits (59), Expect = 8.1
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Frame = +3
Query: 156 LYCLEHGIQP--DGQMPT-DKTIGGGDDSFNTFFSETGAGKHVPRAVFVD-LEPTVVDEV 323
LY L G P D +P K I GG + + S A +PR + VD ++ + E+
Sbjct: 208 LYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSE-ARDLIPRMLIVDPVKRITIPEI 266
Query: 324 RTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 452
R + Q P L D + + I +E+V++ DR
Sbjct: 267 RQHRWFQTHLPRYLAVSPPDTVEQAKKINEEIVQEVVNMGFDR 309
>At3g29160.1 68416.m03652 Snf1-related protein kinase (KIN11)
identical to protein kinase AKin11 GI:1729444 from
[Arabidopsis thaliana]
Length = 512
Score = 27.9 bits (59), Expect = 8.1
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Frame = +3
Query: 156 LYCLEHGIQP--DGQMPT-DKTIGGGDDSFNTFFSETGAGKHVPRAVFVD-LEPTVVDEV 323
LY L G P D +P K I GG + + S A +PR + VD ++ + E+
Sbjct: 208 LYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSE-ARDLIPRMLIVDPVKRITIPEI 266
Query: 324 RTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 452
R + Q P L D + + I +E+V++ DR
Sbjct: 267 RQHRWFQTHLPRYLAVSPPDTVEQAKKINEEIVQEVVNMGFDR 309
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,873,239
Number of Sequences: 28952
Number of extensions: 387060
Number of successful extensions: 1224
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -