Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00534
         (798 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   0.92 
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    23   2.8  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    23   2.8  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    22   4.9  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   8.6  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 566 VRFFQRKLGVVTWEKHSMYLRDSVY*SKSLIYNCIPNSHS 447
           VRFF+ K G V WE    +    V+   ++ +   P  H+
Sbjct: 274 VRFFEEKNGKVVWEGFGDFQPSQVHKQTAICFKA-PRYHT 312


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 180 SYFFPRSYIRTQHNRRQS 233
           SYFF  SYI T ++R+ S
Sbjct: 86  SYFFYLSYIYTTYSRKLS 103


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 180 SYFFPRSYIRTQHNRRQS 233
           SYFF  SYI T ++R+ S
Sbjct: 42  SYFFYLSYIYTTYSRKLS 59


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 655 TSCTGFSCYTAFSETWCK 708
           T    FSCYT  +   CK
Sbjct: 71  TIVNAFSCYTVLAPVLCK 88


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 184 ISFPALIFELNTTDVSLNENKMLKLNLQL 270
           + F AL+F        L ENK  K N++L
Sbjct: 324 LEFRALLFVPRRVPFDLFENKKRKNNIKL 352


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,735
Number of Sequences: 336
Number of extensions: 4374
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)