Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00534
(798 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 29 1.0
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 3.1
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 27 4.1
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ... 27 4.1
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 26 7.2
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi... 25 9.5
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c... 25 9.5
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 25 9.5
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 25 9.5
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = +3
Query: 126 FNGYTSSQRSTSWQNALRSYFFPRSYIRTQHNRRQSERKQDAKAK 260
F GY + ++ ++ NA+ + ++T+ R++ +KQ A+A+
Sbjct: 362 FQGYFAGEKYSAIPNAVAGLYDAEDAVQTERERKERYKKQRAQAE 406
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 173 SVLPTGRSL-RTGIPIEVKCSLGPTPDNISSWG 78
SVLP +SL RTG+P EV + +WG
Sbjct: 200 SVLPPSKSLARTGLPAEVSTQNNANRAALLAWG 232
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 375 IELLSIGGSILVDGGPGGSKAVRKGMRIRDAV 470
+ L+ IGG+ L+ GG SK V R R+ V
Sbjct: 212 VNLIPIGGAKLIQGGNSLSKGVFDDSRTREIV 243
>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 235 NENKMLKLNLQLSGLKMVTMLCHLQGAWKELVI 333
N+N+ L L +KM+T L +G KE V+
Sbjct: 271 NKNQEFSLKLNKRDIKMITTLLQFEGFQKEPVV 303
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 231 SERKQDAKAKSAIEWIKNGDNVMSSP 308
+E+ +D AK+ W+KNG+N S P
Sbjct: 401 TEKTRDI-AKNVATWLKNGENFSSWP 425
>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 87 TYVIRRGTQRTFNFNGYTSSQRSTSWQNALRSYFFPRSYIRTQH-NRRQSERKQDAKAKS 263
T++I RG ++ N Y + + ++ ++ PR I H N ++ Q +KS
Sbjct: 241 TFIILRGGKKGPN---YDAEHVAAVRKDLEKANLPPRIMIDCSHGNSSKNHLNQPKVSKS 297
Query: 264 AIEWIKNGDN 293
E I+NGD+
Sbjct: 298 IAEQIRNGDS 307
>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 522 LFPCYYTQFPLEESNLRIKIHLVTHG 599
L PC T+ E+ R IH THG
Sbjct: 163 LMPCTITKLSKGENIYRTHIHTTTHG 188
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 295 TLSPFLIHSIADLALASCFRSD 230
T+ P L +A +ALASC+ SD
Sbjct: 253 TIEPKLFLKLAKVALASCYISD 274
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 178 DHISFPALIFELNTTDVSLNENKMLKLNLQL 270
DHISFP+ F L +L E K L L++
Sbjct: 466 DHISFPSKPFALGLLHDTLLERKSPTLGLEM 496
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 542 GVVTWEKHSMYLRDSVY*SKSLIYNCIPNSHSFSYRF 432
GV T E+ + +++ SKS Y +PNSH +F
Sbjct: 11 GVHTVEEIEAEIHKNLHISKSCSYQKVPNSHKEFTKF 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,464,416
Number of Sequences: 5004
Number of extensions: 75910
Number of successful extensions: 233
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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