Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00534
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 64 9e-11
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 59 5e-09
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 56 3e-08
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 55 8e-08
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 51 1e-06
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 51 1e-06
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 50 3e-06
11_06_0368 + 22756988-22758205 30 2.5
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 30 2.5
10_08_0935 + 21670372-21671396,21672057-21672987 29 4.3
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849... 29 4.3
04_03_0271 - 13694669-13694770,13694859-13694999,13695258-136953... 29 4.3
02_05_0941 + 32953065-32953089,32954252-32954406,32954486-329545... 29 4.3
02_05_0669 - 30755406-30756081,30756869-30756933,30757040-307572... 29 5.7
08_01_0648 + 5602454-5602513,5602913-5603000,5603128-5604248,560... 28 7.5
02_03_0240 - 16739628-16740369,16740392-16740978 28 7.5
10_08_0288 + 16527666-16527837,16527915-16528132,16528491-165285... 28 9.9
06_03_0796 - 24690115-24690247,24690622-24690808,24691060-246912... 28 9.9
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 64.5 bits (150), Expect = 9e-11
Identities = 33/57 (57%), Positives = 42/57 (73%), Gaps = 3/57 (5%)
Frame = +1
Query: 22 KHTVLARK--EVILSAGPIASPQLLMLSGVGPKEHLTSMGIPVLKDLP-VGKTLYDH 183
+H L R EVILSAG + SPQLL+LSG+GP LTS+GIPV D+P VGK ++D+
Sbjct: 291 QHHALLRPGGEVILSAGSLGSPQLLLLSGIGPANDLTSLGIPVFADVPDVGKHMFDN 347
Score = 31.9 bits (69), Expect = 0.61
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 542 PVSFGRIELKNKNPFSHPRMYGNYLTHPKDVATFIAAIRHV 664
P+S G + L + NP P + NYL+ +D+A + +R V
Sbjct: 419 PLSEGSLWLTSSNPLESPSVRFNYLSRREDLARCVTGMRRV 459
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 58.8 bits (136), Expect = 5e-09
Identities = 29/50 (58%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Frame = +1
Query: 37 ARKEVILSAGPIASPQLLMLSGVGPKEHLTSMGIPVLKDLP-VGKTLYDH 183
AR E+ILSAG + SPQLLMLSGVGP +HL GI ++ D P VG+ + D+
Sbjct: 265 ARNEIILSAGALGSPQLLMLSGVGPADHLEEFGISLVLDHPGVGQGMSDN 314
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/81 (27%), Positives = 38/81 (46%)
Frame = +2
Query: 533 LLHPVSFGRIELKNKNPFSHPRMYGNYLTHPKDVATFIAAIRHVQALVATPPFQKLGAKY 712
+L P S GR+ L+N +P +P + NY +HP D+ A I ++ ++ + F +
Sbjct: 414 VLGPQSTGRLALRNLDPDDNPTVSFNYFSHPDDLRRCAAGIATIERVIRSRAFSRFAYPN 473
Query: 713 IKLPTQLAVTYRLTQMRLGMR 775
P + VT + MR
Sbjct: 474 FAFPATINVTAEFPANLMRMR 494
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 56.0 bits (129), Expect = 3e-08
Identities = 28/49 (57%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Frame = +1
Query: 40 RKEVILSAGPIASPQLLMLSGVGPKEHLTSMGIPVLKDLP-VGKTLYDH 183
+ EVI+SAG + SPQLLMLSGVGP+ HL + GI V+ D P VG+ + D+
Sbjct: 277 KNEVIVSAGTLGSPQLLMLSGVGPQAHLEAHGIEVIVDQPMVGQGVADN 325
Score = 33.9 bits (74), Expect = 0.15
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +2
Query: 533 LLHPVSFGRIELKNKNPFSHPRMYGNYLTHPKDVATFIAAIRHVQALVATPPF 691
+L PVS G +EL+ +P ++P + NY +D+ + I ++ ++ + F
Sbjct: 425 ILGPVSSGHVELRTTDPRANPSVTFNYFREAEDLERCVHGIETIERVIQSRAF 477
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 54.8 bits (126), Expect = 8e-08
Identities = 27/47 (57%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Frame = +1
Query: 46 EVILSAGPIASPQLLMLSGVGPKEHLTSMGIPVLKDLP-VGKTLYDH 183
E+ILSAG + SPQLLMLSGVGP +HL S GI ++ + P VG+ + D+
Sbjct: 275 EIILSAGAMGSPQLLMLSGVGPADHLRSFGITLVLNQPAVGQGMSDN 321
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/70 (30%), Positives = 39/70 (55%)
Frame = +2
Query: 533 LLHPVSFGRIELKNKNPFSHPRMYGNYLTHPKDVATFIAAIRHVQALVATPPFQKLGAKY 712
+L P+S G +EL+N+NP +P + NY HP+D+ +A + ++ ++ + F Y
Sbjct: 422 ILGPLSTGHLELRNRNPDDNPSVTFNYFAHPEDLRRCVAGVSVIERVIRSEAFANFTYPY 481
Query: 713 IKLPTQLAVT 742
+ T L +T
Sbjct: 482 FSVETLLNMT 491
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Frame = +1
Query: 46 EVILSAGPIASPQLLMLSGVGPKEHLTSMGIP-VLKDLPVGKTLYDH 183
E+I+SAG I SPQLL+LSG+GPK L S IP VL + VGK + D+
Sbjct: 278 EIIVSAGAIGSPQLLLLSGIGPKNDLRSHKIPVVLHNKYVGKGMADN 324
Score = 35.5 bits (78), Expect = 0.049
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +2
Query: 542 PVSFGRIELKNKNPFSHPRMYGNYLTHPKDVATFIAAIRHVQALVATPPFQKLGA 706
P+S G + L + + +P + NY +HP+D+ + I+ ++ ++ T F +L A
Sbjct: 421 PLSTGHLALIDTDVKKNPAVTFNYFSHPQDLTRCVYGIKTIERILKTNRFSELSA 475
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/50 (54%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Frame = +1
Query: 37 ARKEVILSAGPIASPQLLMLSGVGPKEHLTSMGI-PVLKDLPVGKTLYDH 183
A+ EVI++AG + SPQLLMLSGVGP+ L GI PVL VG+ + D+
Sbjct: 271 AKSEVIVTAGTLGSPQLLMLSGVGPRGELEKHGILPVLDQPRVGQGVADN 320
Score = 36.3 bits (80), Expect = 0.028
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +2
Query: 533 LLHPVSFGRIELKNKNPFSHPRMYGNYLTHPKDVATFIAAIRHVQALVATPPFQK 697
+L P+S G + L++ +P ++P + NY P+DV + I ++ +V + F +
Sbjct: 421 ILGPMSTGHVALRSADPDANPAVTFNYFRDPRDVERCVRGIETIERVVRSRAFAR 475
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 49.6 bits (113), Expect = 3e-06
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Frame = +1
Query: 1 RHERNRLKHTVLARK---EVILSAGPIASPQLLMLSGVGPKEHLTSMGIP-VLKDLPVGK 168
+ E +H L R E+I+SAG I SPQLL+LSG+GP++ L I VL++ VGK
Sbjct: 274 KDENGGQQHAFLTRNRDSEIIISAGAIGSPQLLLLSGIGPRKELKKHNISVVLRNEHVGK 333
Query: 169 TLYDH 183
+ D+
Sbjct: 334 GMSDN 338
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +2
Query: 542 PVSFGRIELKNKNPFSHPRMYGNYLTHPKDVATFIAAIRHVQALVATPPF 691
P+S G + L + + S+P + NY HPKD++ + I+ ++ ++ T F
Sbjct: 435 PLSTGNLVLVDTDINSNPTVTFNYFQHPKDLSRCVYGIKTIERILKTNHF 484
>11_06_0368 + 22756988-22758205
Length = 405
Score = 29.9 bits (64), Expect = 2.5
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Frame = +3
Query: 177 RSYFFPRSYIRTQHNRRQSERKQDAKAKSAIEWIKNGDNVMSSPGGVEGIGYIKTPVSND 356
R+ P+ TQ ++ E A A A E ++ D+ GGV + YI+T V D
Sbjct: 129 RNALAPQEAPLTQQPQQGDEEGGAAGAAMAAEEVEGDDDDDDGGGGVHHVWYIRT-VGLD 187
Query: 357 LDPIPDIELL-----SIGGSILVDGGPGG 428
I I L GG I + GG GG
Sbjct: 188 ERAIAAITALVYDAKKTGGGIGLAGGGGG 216
>01_06_1535 +
38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -1
Query: 249 HLVFVQTDVGCVEFEYKSGERNMIVKRFAN 160
H V+ Q+D +EF+Y+SG N++V + +
Sbjct: 675 HSVYAQSDDEKLEFDYESGSTNIVVNDYTS 704
>10_08_0935 + 21670372-21671396,21672057-21672987
Length = 651
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +2
Query: 515 WSAFPMLLHPVSFGRIELKNK-NPFSHPRMYGNYLTHPKDVATFIAAIRHVQALVATPPF 691
W F + LH + +GR K + N + + G L P T A ++ L+A P
Sbjct: 496 WWTFGVFLHELMYGRTPFKGQTNRATLFNVVGQQLRFPDHPPTSNAGRDLIRGLLAKEPQ 555
Query: 692 QKLGAK 709
+LG K
Sbjct: 556 GRLGVK 561
>04_03_0630 -
18182681-18182931,18183397-18183463,18184899-18184964,
18185057-18185178,18185263-18185425,18186082-18186329,
18186418-18186751,18186857-18187000,18187079-18187144
Length = 486
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 207 RTQHNRRQSERKQDAKAKSAIEWIKNGDNVMSSPGGVEGIGYIKTPVSNDLDPIPD 374
R Q Q E+ A +A E NG+ V + P EG +TP+ +D +P+
Sbjct: 179 REQEAFSQPEQHVADPAPNAQEADLNGEEVYNPPNNTEGPVVEETPIPEVIDEVPN 234
>04_03_0271 - 13694669-13694770,13694859-13694999,13695258-13695370,
13696253-13696304,13696538-13696660,13696985-13697091,
13697280-13697329,13698284-13698387,13698610-13698690,
13698829-13698913,13699370-13699446,13700587-13700676,
13701338-13701397,13701768-13701872,13701986-13702035,
13702174-13702280,13704735-13704805,13704916-13705144,
13705228-13705704,13705807-13706405
Length = 940
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +2
Query: 515 WSAFPMLLHPVSFGRIELKNKN-PFSHPRMYGNYLTHPKDVATFIAAIRHVQALVATPPF 691
W A +LL+ + +GR + KN + + LT P + +AA + + L+ P
Sbjct: 819 WWALGILLYEMLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLAAKQLIHGLLQRDPS 878
Query: 692 QKLGA 706
++G+
Sbjct: 879 NRIGS 883
>02_05_0941 +
32953065-32953089,32954252-32954406,32954486-32954587,
32955089-32955140,32955237-32955349,32955542-32955610,
32955942-32956049,32956517-32956661,32957245-32957476,
32957567-32957853,32957951-32958087,32958520-32958667,
32959464-32959595,32960239-32960367,32960707-32960834,
32960911-32961075,32961462-32961587,32962088-32962161,
32962285-32962534,32962875-32963054,32963128-32963361,
32964771-32964840,32965065-32965177,32965403-32965511,
32965639-32965688,32965823-32965889,32966131-32966203,
32966393-32966448,32966729-32966831,32967377-32967458,
32967717-32967779,32967918-32967977,32968356-32968448,
32968561-32968623,32968699-32968797
Length = 1363
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 137 YQFSKIYQLAKRFTIIFLS 193
YQF KIYQ+ +RF I+ LS
Sbjct: 744 YQFYKIYQILQRFAIVDLS 762
>02_05_0669 -
30755406-30756081,30756869-30756933,30757040-30757209,
30757313-30757496,30758536-30758619,30758740-30758938,
30760200-30760441,30761811-30762053
Length = 620
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = +1
Query: 139 PVLKDLPVGKTLYDHISFPALIFELNTTDVSLNENKMLKLNLQLSGLKMVTMLCHLQG 312
PVL +LP+G + S PAL F L + + ++ +++ L ++G+++ HL+G
Sbjct: 339 PVLGELPLGPCSHRQGSSPALHFSLLGSKLYVSSTEVVVPKLPVTGMRL-----HLEG 391
>08_01_0648 +
5602454-5602513,5602913-5603000,5603128-5604248,
5605146-5605217,5605218-5605373,5605458-5605748
Length = 595
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 208 ELNTTDVSLNENKMLKLNLQLSGLKMVTMLCHLQGAWKELVISKLRSL 351
EL T ++ K+LKL G+K +T +C+ +EL + + SL
Sbjct: 200 ELEYTSFISHKIKILKLTRVRMGIKFITQICYRCTFLEELELKNVNSL 247
>02_03_0240 - 16739628-16740369,16740392-16740978
Length = 442
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +3
Query: 366 IPDIELLSIGGSILVDGGPGGSKAVRKGMRIRDAVIDEAFGSIDRISKIHGVLFPCYY 539
+P + +L IGG GG GG ++ + A + FG D S + + P Y
Sbjct: 245 MPRMHVLDIGGGFKAGGG-GGESTFQEASAVISAALARHFGGDDMPSGVEVIAEPGRY 301
>10_08_0288 +
16527666-16527837,16527915-16528132,16528491-16528554,
16528749-16528821,16529294-16529371,16529573-16529730,
16530222-16530390,16530531-16530990,16531098-16531478,
16531834-16532037,16532318-16532451,16532937-16533120
Length = 764
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 106 GPKEHLTSMGIPVLKDL 156
GPK+HL +G+ +LKDL
Sbjct: 560 GPKQHLQMIGVQLLKDL 576
>06_03_0796 -
24690115-24690247,24690622-24690808,24691060-24691222,
24691503-24691688,24692005-24692174,24692648-24692774
Length = 321
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +3
Query: 288 DNVMSSPGGVEGIGYIKTPVSNDLDPIPDIELLS 389
D+V S+ G EG+ ++ +PV + P++E+++
Sbjct: 71 DSVASAVAGCEGVFHVASPVPSGRSTNPEVEVIA 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,593,120
Number of Sequences: 37544
Number of extensions: 503175
Number of successful extensions: 1446
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1446
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -