Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00534
         (798 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.62 
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)                 31   0.82 
SB_12732| Best HMM Match : Y_phosphatase (HMM E-Value=0)               30   1.9  
SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)                  30   1.9  
SB_14881| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)                29   4.4  
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)               29   4.4  
SB_8817| Best HMM Match : I-set (HMM E-Value=0)                        28   7.6  

>SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 192 PRSYIRTQHNRRQSERKQDAKAKSAIEWIKNGDNVMSSPGGVEGI 326
           PR Y R +  +R+SER +++  K  +E  +  + V  SP G E +
Sbjct: 377 PRGYERVRKGKRESERVRES-PKGVLEGTRESERVRESPRGSERV 420


>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
          Length = 1175

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 26/97 (26%), Positives = 47/97 (48%)
 Frame = +1

Query: 70   IASPQLLMLSGVGPKEHLTSMGIPVLKDLPVGKTLYDHISFPALIFELNTTDVSLNENKM 249
            I SP L+ +    P  +   +  P L  +P  +T+  HI+ PALI    +  + +N  ++
Sbjct: 941  INSPALISI----PFTNTIHINSPALIGIPFTETI--HINSPALIGIPFSETIHINSPEL 994

Query: 250  LKLNLQLSGLKMVTMLCHLQGAWKELVISKLRSLTIW 360
            + L+  +S    +++L   Q    ELV   L  LT++
Sbjct: 995  IGLSKFISSHGAISLLAEHQVPTLELVADALLDLTVF 1031


>SB_12732| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 800

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 81  PATYVI--RRGTQRTFNFNGYTSSQRSTSWQNALRSYFFPRSYIRTQHNRRQS 233
           P  YVI    GT +   F+ Y     S+    +L+ YFFP +Y +  HN  +S
Sbjct: 122 PRRYVIVLNIGTNQK-EFSLYQEKAFSSKLSQSLKRYFFPGAYCKILHNTPES 173


>SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)
          Length = 900

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 22/73 (30%), Positives = 32/73 (43%)
 Frame = +3

Query: 72  SIPPATYVIRRGTQRTFNFNGYTSSQRSTSWQNALRSYFFPRSYIRTQHNRRQSERKQDA 251
           S P A  V+  G  + F F    +S R T       S  +   Y+R + NRR +   ++ 
Sbjct: 768 SRPFAAIVLMLG--KPFVFGEVRNSSRGTGVAGHNPSSAWYDEYLRIEQNRRLTGVFENQ 825

Query: 252 KAKSAIEWIKNGD 290
           K    +EW KN D
Sbjct: 826 KKMPLLEWGKNAD 838


>SB_14881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
 Frame = +3

Query: 51  NSICWSHSIPPATYVIRRGTQRTFNFNGYTSSQRSTSWQNALRSYFFP--RSYIRTQHNR 224
           NS  ++  I PAT  ++        + GY  +Q  T+ +N+ R+Y+    +    T+ ++
Sbjct: 341 NSDHFTVMIHPATPAVKPAKCAVTRYQGYWRNQVQTAIKNSKRAYYNSKVKGLKETRADK 400

Query: 225 RQSERKQ-DAKAKSAIEW---IKNGDNVMSSPGGVEGIGYIKTPVSNDLDPIPDIELLSI 392
             S  K     + S  +W   + +G N+ S+    E I      + +D  P+   ++ SI
Sbjct: 401 WWSNVKNLSGSSTSRDQWYCQLIDGSNITSTLDLCEKINQFFVGLMSDFSPLTPADVSSI 460


>SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)
          Length = 1281

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
 Frame = +3

Query: 207 RTQHNRRQSERKQDAKA-KSAIEWIKNGDNVMSSPGGVEGIGYIKTPVSNDLDPIPDIEL 383
           R    +    R QD+    S I+W +N D    S   + G+      V +   P  D  +
Sbjct: 685 RNTETKLSPSRFQDSGVGDSTIDWTRN-DGSPGSLAVMSGVLPGSDAVMSGGLPGSDAVI 743

Query: 384 LSIGGS-ILVDGGPGGSKAVRKGMRIRDAVIDEAFGSIDRISKIH 515
             + GS +++ GG  GS AV  G+   DAVI    GS   ++ IH
Sbjct: 744 GGLPGSGVVMSGGLPGSDAVIGGLPGSDAVIGGLPGS-GAVTSIH 787


>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
          Length = 4240

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 67  PIASPQLLMLSGVGPKEHLTSMGIPVLKDLPVGKTLYDHISFPALIFELN 216
           P     ++  SGVGP  HL     PV ++ PV   + D  S+  L + +N
Sbjct: 26  PSVDHSVIQPSGVGPAIHLNGSATPVQENQPVQVLIPDLYSWYDLYYFVN 75


>SB_8817| Best HMM Match : I-set (HMM E-Value=0)
          Length = 2526

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = -2

Query: 134  PIEVKCSLGPTPDNISSW---GDAMGPADRITSLRASTVC-FNRLRSC 3
            P+ ++CS+  TP+   +W   GD +   DRIT++     C  N   SC
Sbjct: 1178 PVRLECSVTGTPEPQITWLKGGDVVKEDDRITTVFDGETCVLNITVSC 1225


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,758,031
Number of Sequences: 59808
Number of extensions: 569127
Number of successful extensions: 1461
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)