Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00534
(798 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC034502-1|AAH34502.1| 594|Homo sapiens choline dehydrogenase p... 64 6e-10
AJ272267-1|CAB75961.1| 482|Homo sapiens choline dehydrogenase p... 64 6e-10
DQ140356-1|AAZ53290.1| 2048|Homo sapiens Fanconi anemia compleme... 31 4.8
Z50749-1|CAA90626.1| 360|Homo sapiens yeast sds22 homolog protein. 31 6.4
BT020134-1|AAV38936.1| 360|Homo sapiens protein phosphatase 1, ... 31 6.4
BC000910-1|AAH00910.1| 360|Homo sapiens protein phosphatase 1, ... 31 6.4
AF067136-2|AAD26610.1| 317|Homo sapiens protein phosphatase-1 r... 31 6.4
AF067136-1|AAD26611.1| 360|Homo sapiens protein phosphatase-1 r... 31 6.4
BC114503-1|AAI14504.1| 472|Homo sapiens zinc finger, imprinted ... 30 8.4
BC114446-1|AAI14447.1| 472|Homo sapiens zinc finger, imprinted ... 30 8.4
AF365931-1|AAL11635.1| 472|Homo sapiens Kruppel-type zinc-finge... 30 8.4
>BC034502-1|AAH34502.1| 594|Homo sapiens choline dehydrogenase
protein.
Length = 594
Score = 64.1 bits (149), Expect = 6e-10
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +1
Query: 10 RNRLKHTVLARKEVILSAGPIASPQLLMLSGVGPKEHLTSMGIPVLKDLP-VGKTLYDHI 186
+N H A KEVILS G I SPQLLMLSG+G + L +GIPV+ LP VG+ L DH+
Sbjct: 279 KNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHL 338
Score = 31.5 bits (68), Expect = 3.6
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +2
Query: 548 SFGRIELKNKNPFSHPRMYGNYLTHPKDVATF---IAAIRHVQALVATPPFQ 694
S G ++L++ NP HP + NYL+ D+ F + R + A A PF+
Sbjct: 431 SVGWLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEALAPFR 482
>AJ272267-1|CAB75961.1| 482|Homo sapiens choline dehydrogenase
protein.
Length = 482
Score = 64.1 bits (149), Expect = 6e-10
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +1
Query: 10 RNRLKHTVLARKEVILSAGPIASPQLLMLSGVGPKEHLTSMGIPVLKDLP-VGKTLYDHI 186
+N H A KEVILS G I SPQLLMLSG+G + L +GIPV+ LP VG+ L DH+
Sbjct: 167 KNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHL 226
Score = 31.5 bits (68), Expect = 3.6
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +2
Query: 548 SFGRIELKNKNPFSHPRMYGNYLTHPKDVATF---IAAIRHVQALVATPPFQ 694
S G ++L++ NP HP + NYL+ D+ F + R + A A PF+
Sbjct: 319 SVGWLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEALAPFR 370
>DQ140356-1|AAZ53290.1| 2048|Homo sapiens Fanconi anemia
complementation group M protein.
Length = 2048
Score = 31.1 bits (67), Expect = 4.8
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = -2
Query: 521 HSMYLRDSVY*SKSLIYNCIPNSHSFSYRFATSRPTIDKYRSPNAEQFDVWYRIQIVRD 345
H M++ VY + N S FSYR + ++ K + E+F +W R+ +RD
Sbjct: 638 HKMFITHGVYEPEKPSRNLQRKSSIFSYRDGMRQSSLKKDWFLSEEEFKLWNRLYRLRD 696
>Z50749-1|CAA90626.1| 360|Homo sapiens yeast sds22 homolog protein.
Length = 360
Score = 30.7 bits (66), Expect = 6.4
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Frame = +1
Query: 202 IFELNTTDVSLNENKMLKLNLQ--LSGLKMVTMLCHLQGAWKELVISKLRSLTIWILYQT 375
+ EL + + EN NL+ G +T L +L A L + ++S + +
Sbjct: 190 MLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLD-ALTNLTVLSMQSNRLTKIEGL 248
Query: 376 SNCSALGDLYLSMVGLEVAKR*EKE*ELGMQL*MRLLDQ*TESLRYMECFSHVTTPSFLW 555
N L +LYLS G+EV + E +L M LD + ++ +E SH+T W
Sbjct: 249 QNLVNLRELYLSHNGIEVIEGLENNNKLTM------LDIASNRIKKIENISHLTELQEFW 302
Query: 556 KN 561
N
Sbjct: 303 MN 304
>BT020134-1|AAV38936.1| 360|Homo sapiens protein phosphatase 1,
regulatory subunit 7 protein.
Length = 360
Score = 30.7 bits (66), Expect = 6.4
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Frame = +1
Query: 202 IFELNTTDVSLNENKMLKLNLQ--LSGLKMVTMLCHLQGAWKELVISKLRSLTIWILYQT 375
+ EL + + EN NL+ G +T L +L A L + ++S + +
Sbjct: 190 MLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLD-ALTNLTVLSMQSNRLTKIEGL 248
Query: 376 SNCSALGDLYLSMVGLEVAKR*EKE*ELGMQL*MRLLDQ*TESLRYMECFSHVTTPSFLW 555
N L +LYLS G+EV + E +L M LD + ++ +E SH+T W
Sbjct: 249 QNLVNLRELYLSHNGIEVIEGLENNNKLTM------LDIASNRIKKIENISHLTELQEFW 302
Query: 556 KN 561
N
Sbjct: 303 MN 304
>BC000910-1|AAH00910.1| 360|Homo sapiens protein phosphatase 1,
regulatory (inhibitor) subunit 7 protein.
Length = 360
Score = 30.7 bits (66), Expect = 6.4
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Frame = +1
Query: 202 IFELNTTDVSLNENKMLKLNLQ--LSGLKMVTMLCHLQGAWKELVISKLRSLTIWILYQT 375
+ EL + + EN NL+ G +T L +L A L + ++S + +
Sbjct: 190 MLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLD-ALTNLTVLSMQSNRLTKIEGL 248
Query: 376 SNCSALGDLYLSMVGLEVAKR*EKE*ELGMQL*MRLLDQ*TESLRYMECFSHVTTPSFLW 555
N L +LYLS G+EV + E +L M LD + ++ +E SH+T W
Sbjct: 249 QNLVNLRELYLSHNGIEVIEGLENNNKLTM------LDIASNRIKKIENISHLTELQEFW 302
Query: 556 KN 561
N
Sbjct: 303 MN 304
>AF067136-2|AAD26610.1| 317|Homo sapiens protein phosphatase-1
regulatory subunit 7 alpha2 protein.
Length = 317
Score = 30.7 bits (66), Expect = 6.4
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Frame = +1
Query: 202 IFELNTTDVSLNENKMLKLNLQ--LSGLKMVTMLCHLQGAWKELVISKLRSLTIWILYQT 375
+ EL + + EN NL+ G +T L +L A L + ++S + +
Sbjct: 147 MLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLD-ALTNLTVLSMQSNRLTKIEGL 205
Query: 376 SNCSALGDLYLSMVGLEVAKR*EKE*ELGMQL*MRLLDQ*TESLRYMECFSHVTTPSFLW 555
N L +LYLS G+EV + E +L M LD + ++ +E SH+T W
Sbjct: 206 QNLVNLRELYLSHNGIEVIEGLENNNKLTM------LDIASNRIKKIENISHLTELQEFW 259
Query: 556 KN 561
N
Sbjct: 260 MN 261
>AF067136-1|AAD26611.1| 360|Homo sapiens protein phosphatase-1
regulatory subunit 7 alpha1 protein.
Length = 360
Score = 30.7 bits (66), Expect = 6.4
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Frame = +1
Query: 202 IFELNTTDVSLNENKMLKLNLQ--LSGLKMVTMLCHLQGAWKELVISKLRSLTIWILYQT 375
+ EL + + EN NL+ G +T L +L A L + ++S + +
Sbjct: 190 MLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLD-ALTNLTVLSMQSNRLTKIEGL 248
Query: 376 SNCSALGDLYLSMVGLEVAKR*EKE*ELGMQL*MRLLDQ*TESLRYMECFSHVTTPSFLW 555
N L +LYLS G+EV + E +L M LD + ++ +E SH+T W
Sbjct: 249 QNLVNLRELYLSHNGIEVIEGLENNNKLTM------LDIASNRIKKIENISHLTELQEFW 302
Query: 556 KN 561
N
Sbjct: 303 MN 304
>BC114503-1|AAI14504.1| 472|Homo sapiens zinc finger, imprinted 3
protein.
Length = 472
Score = 30.3 bits (65), Expect = 8.4
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +1
Query: 607 KLFNSPKR-RGNL--HSCNTSCTGFSCYTAFSETWCKIHKAPYPTCRDIPFDSDETGNA 774
KLF+S R + +L H+C SC AF E W K+ K + P+ + GNA
Sbjct: 174 KLFSSKSRLQSHLRRHACQKPFECHSCGRAFGEKW-KLDKHQKTHAEERPYKCENCGNA 231
>BC114446-1|AAI14447.1| 472|Homo sapiens zinc finger, imprinted 3
protein.
Length = 472
Score = 30.3 bits (65), Expect = 8.4
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +1
Query: 607 KLFNSPKR-RGNL--HSCNTSCTGFSCYTAFSETWCKIHKAPYPTCRDIPFDSDETGNA 774
KLF+S R + +L H+C SC AF E W K+ K + P+ + GNA
Sbjct: 174 KLFSSKSRLQSHLRRHACQKPFECHSCGRAFGEKW-KLDKHQKTHAEERPYKCENCGNA 231
>AF365931-1|AAL11635.1| 472|Homo sapiens Kruppel-type zinc-finger
protein ZIM3 protein.
Length = 472
Score = 30.3 bits (65), Expect = 8.4
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +1
Query: 607 KLFNSPKR-RGNL--HSCNTSCTGFSCYTAFSETWCKIHKAPYPTCRDIPFDSDETGNA 774
KLF+S R + +L H+C SC AF E W K+ K + P+ + GNA
Sbjct: 174 KLFSSKSRLQSHLRRHACQKPFECHSCGRAFGEKW-KLDKHQKTHAEERPYKCENCGNA 231
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,699,471
Number of Sequences: 237096
Number of extensions: 2838651
Number of successful extensions: 9743
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9743
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -