Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00534
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    84   2e-18
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    27   0.20 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   7.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.6  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 83.8 bits (198), Expect = 2e-18
 Identities = 47/104 (45%), Positives = 65/104 (62%), Gaps = 2/104 (1%)
 Frame = +1

Query: 13  NRLKHTVLARKEVILSAGPIASPQLLMLSGVGPKEHLTSMGIPVLKDLP-VGKTLYDHIS 189
           N  +  + AR+EVILSAG + +PQLLMLSG+GPKEHL S+GIPV+ DLP VG+ L++H S
Sbjct: 305 NGRRRIIFARREVILSAGSVNTPQLLMLSGIGPKEHLRSLGIPVVVDLPGVGENLHNHQS 364

Query: 190 FPALIFELNTTDV-SLNENKMLKLNLQLSGLKMVTMLCHLQGAW 318
           F  + F LN     + N+  + +     +G    T L  + G W
Sbjct: 365 F-GMDFSLNEDFYPTFNQTNVDQYLYNQTGPLSSTGLAQVTGIW 407



 Score = 44.4 bits (100), Expect = 1e-06
 Identities = 24/62 (38%), Positives = 34/62 (54%)
 Frame = +2

Query: 536 LHPVSFGRIELKNKNPFSHPRMYGNYLTHPKDVATFIAAIRHVQALVATPPFQKLGAKYI 715
           + P S GRI L +K+P   P ++ N L    D +  I AIR VQ LV T   + LG ++ 
Sbjct: 454 VQPTSKGRITLNSKDPLDPPVIWSNDLATEHDRSVMIQAIRVVQKLVNTTVMRDLGVEFQ 513

Query: 716 KL 721
           K+
Sbjct: 514 KI 515


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +2

Query: 479 GFWINRQNL*DTWSAFPMLLHPVSFGRIELKNKNPFSH---PRMYGNYLTHPKDVATFIA 649
           G+W+      DTW AF ++    S   +   + + + H   P  YG ++T    VA  IA
Sbjct: 89  GYWVFGPRFCDTWIAFDVMCSTASILNLCAISLDRYIHIKDPLRYGRWVTRRIAVAG-IA 147

Query: 650 AIRHVQALVATPP 688
            +  +  L++  P
Sbjct: 148 VVWLLAGLISFVP 160


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 566 VRFFQRKLGVVTWE 525
           VRFF+ K G V WE
Sbjct: 255 VRFFEEKDGQVLWE 268


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 566 VRFFQRKLGVVTWE 525
           VRFF+ K G V WE
Sbjct: 255 VRFFEEKDGQVLWE 268


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -1

Query: 207 EYKSGERNMI 178
           EYKSG+RN+I
Sbjct: 265 EYKSGKRNII 274


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 70  IASPQLLMLSGVGPKEHLTSMGIPVLKDLPVGKT 171
           I   Q L+  G+G + H  S G+   + LP+ K+
Sbjct: 192 ITQSQYLLQQGLGLQGHNPSSGLQPGEGLPMWKS 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,979
Number of Sequences: 438
Number of extensions: 5449
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)