Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00534
(798 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g73050.1 68414.m08447 (R)-mandelonitrile lyase, putative / (R... 62 3e-10
At3g56060.1 68416.m06229 glucose-methanol-choline (GMC) oxidored... 58 7e-09
At1g14185.1 68414.m01678 glucose-methanol-choline (GMC) oxidored... 58 9e-09
At1g14190.1 68414.m01679 glucose-methanol-choline (GMC) oxidored... 56 3e-08
At1g12570.1 68414.m01459 glucose-methanol-choline (GMC) oxidored... 56 4e-08
At5g51930.1 68418.m06442 glucose-methanol-choline (GMC) oxidored... 54 1e-07
At5g51950.1 68418.m06447 glucose-methanol-choline (GMC) oxidored... 54 1e-07
At1g72970.1 68414.m08439 glucose-methanol-choline (GMC) oxidored... 53 3e-07
At2g44830.1 68415.m05582 protein kinase, putative similar to pro... 32 0.38
At4g31110.1 68417.m04415 wall-associated kinase, putative simila... 30 1.5
At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative ... 30 2.0
At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative ... 30 2.0
At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)... 29 2.7
At1g15410.1 68414.m01846 aspartate-glutamate racemase family con... 29 2.7
At5g58140.3 68418.m07277 protein kinase family protein / non pho... 29 3.6
At5g58140.2 68418.m07276 protein kinase family protein / non pho... 29 3.6
At5g58140.1 68418.m07275 protein kinase family protein / non pho... 29 3.6
At3g54210.1 68416.m05992 ribosomal protein L17 family protein co... 29 3.6
At4g30720.1 68417.m04354 expressed protein hypothetical protein ... 29 4.7
At3g54510.1 68416.m06032 early-responsive to dehydration protein... 29 4.7
At3g52190.1 68416.m05731 transducin family protein / WD-40 repea... 29 4.7
At5g53270.1 68418.m06621 seed maturation family protein similar ... 28 6.2
At2g25010.1 68415.m02990 expressed protein 28 6.2
At1g29170.1 68414.m03569 expressed protein ; expression supporte... 28 6.2
At5g11700.1 68418.m01367 glycine-rich protein predicted protein,... 28 8.3
At2g04350.2 68415.m00434 long-chain-fatty-acid--CoA ligase famil... 28 8.3
At2g04350.1 68415.m00433 long-chain-fatty-acid--CoA ligase famil... 28 8.3
At1g14780.1 68414.m01767 expressed protein 28 8.3
>At1g73050.1 68414.m08447 (R)-mandelonitrile lyase, putative /
(R)-oxynitrilase, putative similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|52707];
contains Pfam protile PF00732 GMC oxidoreductase
Length = 552
Score = 62.5 bits (145), Expect = 3e-10
Identities = 32/63 (50%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Frame = +1
Query: 1 RHERNRLKHTVLA-RKEVILSAGPIASPQLLMLSGVGPKEHLTSMGIPVLKDLP-VGKTL 174
R + R H ++ R EVILSAG + SPQLL LSG+GP+ +L++ GIPV D P VG +
Sbjct: 268 RDQLGRFHHALIRDRGEVILSAGALGSPQLLFLSGIGPRSYLSTWGIPVALDQPHVGDFV 327
Query: 175 YDH 183
YD+
Sbjct: 328 YDN 330
>At3g56060.1 68416.m06229 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 577
Score = 58.0 bits (134), Expect = 7e-09
Identities = 35/65 (53%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Frame = +1
Query: 46 EVILSAGPIASPQLLMLSGVGPKEHLTSMGI-PVLKDLP-VGKTLYDHISFPALIFELNT 219
EVILSAG IASPQLLMLSGVGP HL + + PV+ D P VG+ + D+ P I
Sbjct: 274 EVILSAGAIASPQLLMLSGVGPAAHLAAYRVNPVIVDQPMVGQGMGDNPMNPVFIPSPEP 333
Query: 220 TDVSL 234
+VSL
Sbjct: 334 VEVSL 338
Score = 34.3 bits (75), Expect = 0.095
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +2
Query: 542 PVSFGRIELKNKNPFSHPRMYGNYLTHPKDVATFIAAIRHVQALVATPPFQK 697
P+S G +EL+N NP +P + NY P+D+ + + + ++ + + K
Sbjct: 412 PLSRGHLELRNTNPDDNPSVTFNYFKDPEDLNKCVEGLSTIIKVIDSKGYSK 463
>At1g14185.1 68414.m01678 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 503
Score = 57.6 bits (133), Expect = 9e-09
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Frame = +1
Query: 25 HTVLARKEVILSAGPIASPQLLMLSGVGPKEHLTSMGIPVLKDL-PVGKTLYDHISFPAL 201
H R EVIL+AG + SPQ+L+LSG+GP+ HL IPV+ +L VGK + D+ + L
Sbjct: 256 HVEQHRGEVILAAGALGSPQILLLSGIGPENHLNDFDIPVIVNLKEVGKQMSDNPAISLL 315
Query: 202 I--FELNTT 222
+ F N T
Sbjct: 316 VDRFSQNLT 324
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 542 PVSFGRIELKNKNPFSHPRMYGNYLTHPKDVATFIAAIRHVQ 667
P S GR++L N NP +P + NYL + D+ + H+Q
Sbjct: 364 PKSKGRLKLNNTNPRENPSVTFNYLENKADLDACQEMVLHLQ 405
>At1g14190.1 68414.m01679 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 501
Score = 56.0 bits (129), Expect = 3e-08
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Frame = +1
Query: 25 HTVLARKEVILSAGPIASPQLLMLSGVGPKEHLTSMGIPVLKDL-PVGKTLYDHISFPAL 201
H R EVIL+AG + SPQ+L+LSG+GP+ HL IPV+ +L VG+ + D+ + L
Sbjct: 236 HVEQHRGEVILAAGALGSPQILLLSGIGPENHLKDFDIPVIVNLKEVGRKMSDNPAISLL 295
Query: 202 I--FELNTT 222
+ F N T
Sbjct: 296 VDRFSQNRT 304
Score = 32.3 bits (70), Expect = 0.38
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 542 PVSFGRIELKNKNPFSHPRMYGNYLTHPKDVATFIAAIRHVQ 667
P S GR++L + NP +P + NYL + D+ + + H+Q
Sbjct: 344 PKSKGRLKLNSTNPRENPSVKFNYLENKADLDACLEMVLHLQ 385
>At1g12570.1 68414.m01459 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 572
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/50 (56%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Frame = +1
Query: 37 ARKEVILSAGPIASPQLLMLSGVGPKEHLTSMGIPVLKDLP-VGKTLYDH 183
A E+ILSAG + SPQLLMLSGVGP L + I V+ D P VG+ +YD+
Sbjct: 269 ALSEIILSAGTLGSPQLLMLSGVGPSAQLQAQNITVVMDQPHVGQGMYDN 318
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = +2
Query: 533 LLHPVSFGRIELKNKNPFSHPRMYGNYLTHPKDVATFIAAIRHVQALVATPPFQK 697
++ P+S G +ELK +NP +P + NY HP D+ + I+ ++ +V + F +
Sbjct: 406 VMGPLSTGHLELKTRNPKDNPIVTFNYFQHPDDLKRCVRGIQTIERVVQSKAFSR 460
>At5g51930.1 68418.m06442 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 582
Score = 54.0 bits (124), Expect = 1e-07
Identities = 31/58 (53%), Positives = 42/58 (72%), Gaps = 3/58 (5%)
Frame = +1
Query: 37 ARKEVILSAGPIASPQLLMLSGVGPKEHLTSMGI-PVLKDLP-VGKTLYDH-ISFPAL 201
A EVILSAG + SPQLLMLSGVGP HL + G+ P++ D P VG+ + D+ ++F A+
Sbjct: 290 ATNEVILSAGALGSPQLLMLSGVGPAVHLEAHGVNPLVLDQPMVGQGMADNPMNFVAI 347
Score = 34.3 bits (75), Expect = 0.095
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 542 PVSFGRIELKNKNPFSHPRMYGNYLTHPKDVATFIAAIRHVQALVATPPFQK 697
P S G ++L+N NP +P + NY P+D+ + + + ++ + F K
Sbjct: 437 PASKGHMKLRNTNPRDNPSVTFNYYQEPEDLNKCVKGLNTIIRMINSKAFSK 488
>At5g51950.1 68418.m06447 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 586
Score = 53.6 bits (123), Expect = 1e-07
Identities = 33/65 (50%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Frame = +1
Query: 46 EVILSAGPIASPQLLMLSGVGPKEHLTSMGI-PVLKDLP-VGKTLYDHISFPALIFELNT 219
EVILSAG I SPQLLMLSG+GP HL + GI P++ D P VG+ + D+ I
Sbjct: 272 EVILSAGAIGSPQLLMLSGIGPAAHLAAHGIKPLVLDHPMVGQGMGDNPMNAIFIPSPTP 331
Query: 220 TDVSL 234
+VSL
Sbjct: 332 VEVSL 336
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 542 PVSFGRIELKNKNPFSHPRMYGNYLTHPKDVATFIAAIRHVQALVATPPFQK 697
P+S G +EL+N NP +P + NY P+D+ + I + ++ + F K
Sbjct: 421 PISRGHLELRNTNPDDNPSVRFNYYQEPEDLQICVEGINTIIKVINSKAFSK 472
>At1g72970.1 68414.m08439 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 594
Score = 52.8 bits (121), Expect = 3e-07
Identities = 27/47 (57%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Frame = +1
Query: 46 EVILSAGPIASPQLLMLSGVGPKEHLTSMGIP-VLKDLPVGKTLYDH 183
EVILS+G I SPQ+LMLSG+GPK+ L + IP VL++ VGK + D+
Sbjct: 288 EVILSSGAIGSPQMLMLSGIGPKKELQRLKIPVVLENEHVGKGMADN 334
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +2
Query: 533 LLHPVSFGRIELKNKNPFSHPRMYGNYLTHPKDVATFIAAIRHVQALVATPPF 691
L +P+S G + L N N +P + NY HP D+ + AIR V +V + F
Sbjct: 428 LAYPISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRLVSKVVTSNRF 480
>At2g44830.1 68415.m05582 protein kinase, putative similar to
protein kinase PVPK-1 [Phaseolus vulgaris]
SWISS-PROT:P15792
Length = 765
Score = 32.3 bits (70), Expect = 0.38
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 515 WSAFPMLLHPVSFGRIELKNK-NPFSHPRMYGNYLTHPKDVATFIAAIRHVQALVATPPF 691
W F + +H + +G+ K N + + G L P+ AT A +QAL+ P
Sbjct: 620 WWTFGIFVHELLYGKTPFKGSGNRATLFNVVGEQLKFPESPATSYAGRDLIQALLVKDPK 679
Query: 692 QKLGAK 709
+LG K
Sbjct: 680 NRLGTK 685
>At4g31110.1 68417.m04415 wall-associated kinase, putative similar
to wall-associated kinase 1, Arabidopsis thaliana,
gb:AJ009696
Length = 756
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 610 LFNSPKRRGNLHSCNTSCTGFSCYTAFSETWCKIHKAPYPTCRDIPFD-SDETG 768
++ PK G SCNTS +S F E C + PY + P + ++ETG
Sbjct: 156 MYIKPKMVGCELSCNTSKDSYSNSIPFVEAGCSSNVLPYSQDQGCPEEIAEETG 209
>At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -2
Query: 125 VKCSLGPTPDNISSW-GDAMGPAD 57
V CS GPT D++ W MGPAD
Sbjct: 19 VSCSAGPTGDDMFQWQATIMGPAD 42
>At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -2
Query: 125 VKCSLGPTPDNISSW-GDAMGPAD 57
V CS GPT D++ W MGPAD
Sbjct: 19 VSCSAGPTGDDMFQWQATIMGPAD 42
>At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)
family protein similar to SP|P41972 Isoleucyl-tRNA
synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase)
(IleRS) {Staphylococcus aureus}; contains Pfam profile
PF00133: tRNA synthetases class I (I, L, M and V)
Length = 1093
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 137 YQFSKIYQLAKRFTIIFLS 193
YQF KI+Q+ +RFTI+ LS
Sbjct: 835 YQFFKIFQIIQRFTIVDLS 853
>At1g15410.1 68414.m01846 aspartate-glutamate racemase family
contains Pfam profile PF|01177 Aspartate-glutamate
racemase family; contains TIGRFAM TIGR00035: aspartate
racemase; similar to aspartate racemase
(GI:5458794){Pyrococcus abyssi}
Length = 330
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +1
Query: 172 LYDHISFPALIFELNTTDVS---LNENKMLKLN-LQLSGLKMVTMLCHLQGAWKELV 330
LY+ S+P+L +T V + EN K L+ G K++ M CH+ W E V
Sbjct: 127 LYEENSYPSLYHREESTPVDPKLIVENLRNKRRYLERCGAKLILMPCHIAHIWYEEV 183
>At5g58140.3 68418.m07277 protein kinase family protein / non
phototropic hypocotyl 1-like protein (NPL1) contains
Pfam domains, PF00069: Protein kinase domain and
PF00785: PAC motif; similar to SP:O48963 Nonphototropic
hypocotyl protein 1 (Phototropin) [Mouse-ear
cress] {Arabidopsis thaliana}; identical to cDNA non
phototropic hypocotyl 1-like (NPL1) GI:5391441
Length = 915
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 515 WSAFPMLLHPVSFGRIELKNKN-PFSHPRMYGNYLTHPKDVATFIAAIRHVQALVATPPF 691
W A +LL+ + +GR + KN + + LT P + + + + L+ P
Sbjct: 787 WWALGILLYEMLYGRTPFRGKNRQKTFANILHKDLTFPSSIPVSLVGRQLINTLLNRDPS 846
Query: 692 QKLGAK 709
+LG+K
Sbjct: 847 SRLGSK 852
>At5g58140.2 68418.m07276 protein kinase family protein / non
phototropic hypocotyl 1-like protein (NPL1) contains
Pfam domains, PF00069: Protein kinase domain and
PF00785: PAC motif; similar to SP:O48963 Nonphototropic
hypocotyl protein 1 (Phototropin) [Mouse-ear
cress] {Arabidopsis thaliana}; identical to cDNA non
phototropic hypocotyl 1-like (NPL1) GI:5391441
Length = 915
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 515 WSAFPMLLHPVSFGRIELKNKN-PFSHPRMYGNYLTHPKDVATFIAAIRHVQALVATPPF 691
W A +LL+ + +GR + KN + + LT P + + + + L+ P
Sbjct: 787 WWALGILLYEMLYGRTPFRGKNRQKTFANILHKDLTFPSSIPVSLVGRQLINTLLNRDPS 846
Query: 692 QKLGAK 709
+LG+K
Sbjct: 847 SRLGSK 852
>At5g58140.1 68418.m07275 protein kinase family protein / non
phototropic hypocotyl 1-like protein (NPL1) contains
Pfam domains, PF00069: Protein kinase domain and
PF00785: PAC motif; similar to SP:O48963 Nonphototropic
hypocotyl protein 1 (Phototropin) [Mouse-ear
cress] {Arabidopsis thaliana}; identical to cDNA non
phototropic hypocotyl 1-like (NPL1) GI:5391441
Length = 915
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 515 WSAFPMLLHPVSFGRIELKNKN-PFSHPRMYGNYLTHPKDVATFIAAIRHVQALVATPPF 691
W A +LL+ + +GR + KN + + LT P + + + + L+ P
Sbjct: 787 WWALGILLYEMLYGRTPFRGKNRQKTFANILHKDLTFPSSIPVSLVGRQLINTLLNRDPS 846
Query: 692 QKLGAK 709
+LG+K
Sbjct: 847 SRLGSK 852
>At3g54210.1 68416.m05992 ribosomal protein L17 family protein
contains Pfam profile: PF01196 ribosomal protein L17
Length = 211
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 37 ARKEVILSAGPIASPQLLMLSGVGPKEHLTSMGIPVLKDLPVGKTLYD 180
+R+ V L PI+SP L SG+ P L S+G+P + G + D
Sbjct: 42 SRRPVTLRL-PISSPSLPSFSGLSPVNPLLSIGLPDWQSFENGFKIVD 88
>At4g30720.1 68417.m04354 expressed protein hypothetical protein -
Synechocystis sp. (strain PCC 6803),PIR2:S76076
Length = 749
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 21 KTYCTST*RSNSICWSHSIPPATYVIRRGTQRT-FNFNGYTSSQRSTSWQNA 173
KT S S C+S + P V+ T T NG + S+RS+ W NA
Sbjct: 509 KTEDLSQSSSKRSCYSFCMCPGGQVVLTSTNPTELCINGMSFSRRSSKWANA 560
>At3g54510.1 68416.m06032 early-responsive to dehydration
protein-related / ERD protein-related low similarity to
ERD4 protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 617
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 605 GNYLTHPKDVATFIAAIRHVQA 670
G YLTHP+D+ + +AA QA
Sbjct: 371 GEYLTHPRDIPSHLAAAVSAQA 392
>At3g52190.1 68416.m05731 transducin family protein / WD-40 repeat
family protein similar to St12p protein (GI:166878)
{Arabidopsis thaliana}; contains Pfam profile: PF00400
WD domain, G-beta repeat
Length = 398
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 598 PWVTKWIFILKFDSSKGNWV**HGKSTPCILEILSIDPKASSITAS 461
P W+ I K +G+ V S+P +L I S DP +S+++S
Sbjct: 22 PKKVNWVLIAKASKRRGSSV-----SSPALLNIFSFDPITASLSSS 62
>At5g53270.1 68418.m06621 seed maturation family protein similar to
SP|P09444 Late embryogenesis abundant protein D-34 (LEA
D-34) {Gossypium hirsutum}; contains Pfam profile
PF04927: Seed maturation protein
Length = 159
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +3
Query: 336 KTPV-SNDLDPIPDIELLSIGGSILVDGG--PGGSKAVRKGMRI 458
+ PV + DL I ++E +IGG I DGG SKAV + +I
Sbjct: 45 RKPVETTDLAAIKEVEARAIGGDIESDGGVTAVASKAVARNQKI 88
>At2g25010.1 68415.m02990 expressed protein
Length = 509
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +3
Query: 204 IRTQHNRRQSERKQDAKAKSAI---EWIKNGDNVMSSPGG 314
++ + R++ R D ++ EW + GD+++ SPGG
Sbjct: 353 LKVKRRDRKNRRLDDLDTSMSLACEEWAERGDHIVDSPGG 392
>At1g29170.1 68414.m03569 expressed protein ; expression supported
by MPSS
Length = 1016
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 102 RGTQRTFNFNGYTSSQRSTSWQNALRSYFFPRSYIRTQHNRRQS 233
R T +F+F+G TSS ++TS + + Y F + R+ +R S
Sbjct: 208 RKTFASFSFSGQTSSTKTTSTSDMEKRYDFQDHHSRSFESRSGS 251
>At5g11700.1 68418.m01367 glycine-rich protein predicted protein,
Arabidopsis thaliana
Length = 1411
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 375 IELLSIGGSILVDGGPGGSK 434
++LL + GS+L +GG GG+K
Sbjct: 246 LQLLDVNGSLLANGGYGGAK 265
>At2g04350.2 68415.m00434 long-chain-fatty-acid--CoA ligase family
protein / long-chain acyl-CoA synthetase family protein
(LACS8) similar to LACS 4 [SP|O35547] from Rattus
norvegicus, LACS 4 [SP|O60488] from Homo sapiens;
contains Pfam HMM hit: AMP-binding enzymes PF00501
Length = 720
Score = 27.9 bits (59), Expect = 8.3
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +1
Query: 169 TLYDHISFPALIFELNTTDVS--LNENKML-KLNLQLSGLKMVTMLCHLQGAWKELVISK 339
T+Y + ALI+ LN T VS + ++K L KL+ S LK V + +++ ++ S
Sbjct: 183 TIYASLGEEALIYSLNETRVSTLICDSKQLKKLSAIQSSLKTVKNIIYIEEDGVDVASSD 242
Query: 340 LRSLTIWILYQTSNCSALG 396
+ S+ + S LG
Sbjct: 243 VNSMGDITVSSISEVEKLG 261
>At2g04350.1 68415.m00433 long-chain-fatty-acid--CoA ligase family
protein / long-chain acyl-CoA synthetase family protein
(LACS8) similar to LACS 4 [SP|O35547] from Rattus
norvegicus, LACS 4 [SP|O60488] from Homo sapiens;
contains Pfam HMM hit: AMP-binding enzymes PF00501
Length = 720
Score = 27.9 bits (59), Expect = 8.3
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +1
Query: 169 TLYDHISFPALIFELNTTDVS--LNENKML-KLNLQLSGLKMVTMLCHLQGAWKELVISK 339
T+Y + ALI+ LN T VS + ++K L KL+ S LK V + +++ ++ S
Sbjct: 183 TIYASLGEEALIYSLNETRVSTLICDSKQLKKLSAIQSSLKTVKNIIYIEEDGVDVASSD 242
Query: 340 LRSLTIWILYQTSNCSALG 396
+ S+ + S LG
Sbjct: 243 VNSMGDITVSSISEVEKLG 261
>At1g14780.1 68414.m01767 expressed protein
Length = 627
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Frame = +1
Query: 139 PVLKDLPVGK-----TLYD--HISFPALIFELNTTDVSLNENKMLKLNLQLSGLKMVTML 297
PV DLP G + Y HI+F +NTT V+ +N + + L G K +
Sbjct: 349 PVHNDLPFGAAPNMASAYPALHINFMGPKLYVNTTPVTSEKNPVTGMRFFLEGKKCNRLA 408
Query: 298 CHLQ 309
HLQ
Sbjct: 409 IHLQ 412
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,108,335
Number of Sequences: 28952
Number of extensions: 400762
Number of successful extensions: 1059
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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