Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00531
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    27   4.1  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   7.2  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    26   7.2  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   7.2  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    26   7.2  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   9.5  

>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 120 MTMKRPINWFLTETGRKFTFAVISGTGIA-LTAARFTPNTIFLHKYKILFN 269
           +T+    NW         ++ ++SG+ +A  T   F   T+F H  +I+FN
Sbjct: 424 VTVANGHNWMCILNYLTDSYPLLSGSAVAAFTLPSFIGATVFAHVSQIMFN 474


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 323 EKCLDILKMSDIHR-KVISPFSAYG 394
           EKCLD+L   D+ R K+   +  YG
Sbjct: 521 EKCLDVLLSMDVERFKIAEAYYRYG 545


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 431 FGVAVGIPINFTYKSIEDLKNSPIQVI 511
           +G  +GI +  TY  +  +KN  +++I
Sbjct: 34  YGTVIGIDLGTTYSCVAVMKNGRVEII 60


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 295  FYWFSITVMLNKILYLCKNIVFGVNLAAVNAIPVPLIT 182
            FYW  + ++   + YL   + FG+ L     I VP +T
Sbjct: 995  FYWIYVNLLPKPLFYLLSRLWFGL-LETFRDILVPPVT 1031


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/46 (19%), Positives = 25/46 (54%)
 Frame = +1

Query: 601 REILMTHNYKMIYESVYPFGCVFLPITCVVF*IGSLIYTLDQSVSE 738
           ++ ++   + +++  +YP   +F  + CV++ I S +Y   + V +
Sbjct: 497 KDFVLMFGFLVMFSPIYPLAPIFSLVNCVLY-IRSSVYRFTKMVKK 541


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 660 TEWIYRLINHFVIMC 616
           T WIY L+N  V+MC
Sbjct: 236 TGWIYSLLNQNVLMC 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,270,766
Number of Sequences: 5004
Number of extensions: 67288
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)