Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00531
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42946| Best HMM Match : Peptidase_M48 (HMM E-Value=0.082)           39   0.005
SB_38304| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.39)               36   0.050
SB_2394| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_9157| Best HMM Match : Fumarate_red_C (HMM E-Value=1.8)             28   7.6  
SB_42266| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_42946| Best HMM Match : Peptidase_M48 (HMM E-Value=0.082)
          Length = 460

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 24/63 (38%), Positives = 33/63 (52%)
 Frame = +2

Query: 314 QCYEKCLDILKMSDIHRKVISPFSAYGXDLFHAGTTCSRFGVAVGIPINFTYKSIEDLKN 493
           Q YE+     KM   H + +S F   G   FHAG T    G  +GIP  + +++ ED+ N
Sbjct: 342 QIYEEMA--AKMHLEHPERVSFFVNRGFSGFHAGATKLPNGAVIGIPGWYLFETAEDVMN 399

Query: 494 SPI 502
           SPI
Sbjct: 400 SPI 402


>SB_38304| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.39)
          Length = 704

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 427 KIWCSCGNSNKFYIQIY*GS*KLTHTSNQKAVDWSSEVGKKLADALILPENVK 585
           KI C C  + K Y  I+ GS  L   S Q    W+++  +++ D  +L +NV+
Sbjct: 577 KIGCICNETTKVYANIHKGSQLLVEASVQNIQTWATDC-RRVLDKFVLDDNVR 628


>SB_2394| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 590

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 222 FTPNTIFLHKYKILFNITV 278
           F PNT+ L KY +LFNI++
Sbjct: 498 FFPNTLTLEKYLVLFNISI 516


>SB_9157| Best HMM Match : Fumarate_red_C (HMM E-Value=1.8)
          Length = 294

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 332 LDILKMSDIHRK-VISPFSAYGXDLFHAGTTCSRFGVAVGIPINFTYKSIEDLKNSPIQV 508
           LD++K   + R+ +I  F+ +   + + G       ++  + INF   SI D+ N+PI  
Sbjct: 61  LDMIKTPKLRRRTIIVCFNWFVVSIIYFGFVLYITSLSGDVYINFLLMSIIDVFNTPISW 120

Query: 509 IKKQLIG 529
              Q IG
Sbjct: 121 FLLQKIG 127


>SB_42266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 126 MKRPINWFLTETGRKFTFAVISGTGIALTAARFTPNTIFLHKYKI 260
           +KRP+N+     GRK +F       I +    + P+ +F   Y +
Sbjct: 234 LKRPVNYPPYLQGRKLSFVFSEDVAILMNHLPYLPDNVFNQAYNL 278


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,202,885
Number of Sequences: 59808
Number of extensions: 461806
Number of successful extensions: 1072
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)