Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00531
         (797 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC004404-1|AAH04404.1|  311|Homo sapiens transmembrane protein 1...    32   2.1  
AC069154-1|AAY24148.1|  311|Homo sapiens unknown protein.              32   2.1  
AY336054-1|AAQ01588.1|  308|Homo sapiens gycosyltransferase fami...    31   6.4  

>BC004404-1|AAH04404.1|  311|Homo sapiens transmembrane protein 177
           protein.
          Length = 311

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 520 VDWSSEVGKKLADALILPENVKKFAICREIL 612
           VDW S  G +L  +L L    +KFA+ RE++
Sbjct: 129 VDWRSPAGARLRASLTLSREAQKFALAREVV 159


>AC069154-1|AAY24148.1|  311|Homo sapiens unknown protein.
          Length = 311

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 520 VDWSSEVGKKLADALILPENVKKFAICREIL 612
           VDW S  G +L  +L L    +KFA+ RE++
Sbjct: 129 VDWRSPAGARLRASLTLSREAQKFALAREVV 159


>AY336054-1|AAQ01588.1|  308|Homo sapiens gycosyltransferase family
           6 like-protein protein.
          Length = 308

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 257 DFVQHYSNGKPVELSNELEQCYEKCLDILKMSDIHRKVISPFSAYGXDL 403
           DF++ Y NG   ++ N L   YEK L+     +   K++SP  AY  DL
Sbjct: 241 DFIKEYLNGVIHDIKNGLNSTYEKHLNKYFYLNKPTKLLSP--AYSWDL 287


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,569,714
Number of Sequences: 237096
Number of extensions: 2176580
Number of successful extensions: 7307
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7307
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)