Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00531
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016420-3|AAB65310.1|  291|Caenorhabditis elegans Serpentine re...    29   2.9  
Z82272-8|CAB05223.1|  337|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z82260-13|CAB05143.1|  337|Caenorhabditis elegans Hypothetical p...    28   6.7  
U80030-8|AAG24166.2|  375|Caenorhabditis elegans Serpentine rece...    28   8.9  

>AF016420-3|AAB65310.1|  291|Caenorhabditis elegans Serpentine
           receptor, class sx protein13 protein.
          Length = 291

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 645 CISIRLCLFAYNLCSFLNRKLNLYAR 722
           C+   LCLF  +LC+ L  KLN+  R
Sbjct: 51  CVFQTLCLFGTSLCALLTLKLNIKRR 76


>Z82272-8|CAB05223.1|  337|Caenorhabditis elegans Hypothetical
           protein F55G11.1 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 63  STVVLLYAFIVLDKYLHITMTMKRPINWFLTETGRKFTFAVISGTGIALTAA 218
           + +VLL  FI+L+K+L    +  R I   +T    K+  A+I   G ++ +A
Sbjct: 111 TAIVLLMFFIILEKFLWTCSSRTRQIFRVVTIGKNKYWLALIGCIGYSVLSA 162


>Z82260-13|CAB05143.1|  337|Caenorhabditis elegans Hypothetical
           protein F55G11.1 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 63  STVVLLYAFIVLDKYLHITMTMKRPINWFLTETGRKFTFAVISGTGIALTAA 218
           + +VLL  FI+L+K+L    +  R I   +T    K+  A+I   G ++ +A
Sbjct: 111 TAIVLLMFFIILEKFLWTCSSRTRQIFRVVTIGKNKYWLALIGCIGYSVLSA 162


>U80030-8|AAG24166.2|  375|Caenorhabditis elegans Serpentine
           receptor, class w protein112 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 34  YFANVQLQLGVQWSFYMHLLF 96
           Y  N  LQ+ +QW FY +L++
Sbjct: 295 YILNPILQMSIQWGFYTYLVY 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,834,779
Number of Sequences: 27780
Number of extensions: 373826
Number of successful extensions: 1053
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)