Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00531
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   0.81 
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   5.7  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   5.7  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   5.7  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   5.7  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -2

Query: 595 LQISSHFLAKSMHLPTSCLL 536
           +++ SH ++K +H+P S L+
Sbjct: 131 IELISHIISKQLHIPVSVLM 150


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 247 CKNIVFGVNLAAVNAIPVPLITAKVNLRPV 158
           CK + + +N      IPVP+       RP+
Sbjct: 104 CKKLYYNINYIEQIPIPVPVYYGNFPPRPM 133


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 247 CKNIVFGVNLAAVNAIPVPLITAKVNLRPV 158
           CK + + +N      IPVP+       RP+
Sbjct: 109 CKKLYYNINYIEQIPIPVPVYYGNFPPRPM 138


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 247 CKNIVFGVNLAAVNAIPVPLITAKVNLRPV 158
           CK + + +N      IPVP+       RP+
Sbjct: 109 CKKLYYNINYIEQIPIPVPVYYGNFPPRPM 138


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 247 CKNIVFGVNLAAVNAIPVPLITAKVNLRPV 158
           CK + + +N      IPVP+       RP+
Sbjct: 109 CKKLYYNINYIEQIPIPVPVYYGNFPPRPM 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,196
Number of Sequences: 438
Number of extensions: 4457
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)