Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00531
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50290.1 68414.m05638 expressed protein                             31   0.89 
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains...    30   2.0  
At2g22475.1 68415.m02666 GRAM domain-containing protein / ABA-re...    29   2.7  
At4g20850.1 68417.m03025 subtilase family protein contains simil...    28   8.3  

>At1g50290.1 68414.m05638 expressed protein
          Length = 134

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 652 PFGCVFLPITCVVF*IGSLIYTLDQSVSEVLGYHS-RLSVQECIF 783
           PF  +FLPI  V F +   I + D +   +LG++S RLS + CIF
Sbjct: 35  PFDRLFLPIALVSFSVFLSIISKDFNWRLILGHNSLRLSFRICIF 79


>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
           Pfam profile: PF00004 ATPase family
          Length = 520

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 667 RHNRMDIQTHKSFCNYVSLKFL 602
           R  RMD+  + SFCN+ SLK L
Sbjct: 383 RSGRMDMHIYMSFCNFPSLKIL 404


>At2g22475.1 68415.m02666 GRAM domain-containing protein /
           ABA-responsive protein-related similar to ABA-responsive
           protein [Hordeum vulgare] GI:4103635; contains Pfam
           profile PF02893: GRAM domain
          Length = 299

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 797 YFPVGKIHSCTDNLLWYPSTSETDWSSV*IKLPIQKTTQV 678
           Y    K+  C+DN L Y +  +T+WS   + +P+ +   V
Sbjct: 209 YISSAKLAYCSDNPLSYKNGDQTEWSYYKVVIPLHQLKAV 248


>At4g20850.1 68417.m03025 subtilase family protein contains
           similarity to Tripeptidyl-peptidase II (EC 3.4.14.10)
           (TPP-II) (Tripeptidyl aminopeptidase)
           (Swiss-Prot:P29144) [Homo sapiens]
          Length = 1380

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = +3

Query: 126 MKRPINW-----FLTETGRKFTFAVISGTGIALTAARF 224
           ++RPI W     F + + + F F V+SG  + L  A+F
Sbjct: 816 LRRPIKWESAPTFASPSAKSFVFPVVSGQTMELAIAQF 853


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,305,407
Number of Sequences: 28952
Number of extensions: 325221
Number of successful extensions: 754
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)