Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00530
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673...    86   4e-17
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677...    66   4e-11
03_01_0107 + 849489-850652,850745-850835,850926-851083,851180-85...    30   2.5  
06_01_0228 - 1736373-1736721,1739915-1740120,1740513-1740844,174...    29   4.3  

>03_05_0168 -
           21466431-21466445,21467053-21467160,21467222-21467365,
           21467778-21467846,21467928-21468071,21468409-21468565,
           21468671-21468767,21469015-21469297,21469382-21469507,
           21470098-21470178,21471990-21472072,21472393-21472478,
           21473329-21473422,21473516-21473681,21473777-21473851,
           21474082-21474157,21474259-21474347
          Length = 630

 Score = 85.8 bits (203), Expect = 4e-17
 Identities = 48/108 (44%), Positives = 67/108 (62%), Gaps = 21/108 (19%)
 Frame = +1

Query: 508 ANAKLYETED-KFFKDTDKLRRGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLHMLPHL 684
           A+A+  E ED +F K    L+RGDI+G  G+PGK+K+GELSI PK I +L+PCLHM+P  
Sbjct: 164 ADARTSELEDNEFIKFHSTLKRGDIVGVCGYPGKSKRGELSIFPKKIVVLSPCLHMMPRQ 223

Query: 685 --------------------HFGLKDKETRFRKRYLDLILNDKVRQSF 768
                                + L+D+ETR+R+RYLDL++N +VR  F
Sbjct: 224 KSEGSAVPTPWAPGMGRNIEKYVLRDQETRYRQRYLDLMVNHEVRHIF 271



 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 38/84 (45%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
 Frame = +2

Query: 257 YYKLRSGAVAALK-NGLKEDHPYPHKFNVSISLEEFIEKYQNLNNGDVLENVTLSVAGRV 433
           YY+ R  A+ +LK  G+   +PYPHKF  +I++ ++IEKY+++N GD L +VT  +AGR+
Sbjct: 82  YYENRLKALDSLKATGV---NPYPHKFLANITVADYIEKYKSMNVGDKLVDVTECLAGRI 138

Query: 434 HSIRESGAKLIFYDLRAEGAKIQV 505
            + R   +KL+FYDL   G K+QV
Sbjct: 139 MTKRAQSSKLLFYDLYGGGEKVQV 162


>02_05_0003 -
           24867053-24867145,24867264-24867437,24867673-24867735,
           24868108-24868198,24869579-24869673,24870471-24870668,
           24871475-24871648,24872335-24872439,24872645-24872737,
           24873688-24873690,24874776-24874844,24875208-24875265,
           24875810-24875918,24876603-24876714,24877992-24878204,
           24878214-24878546
          Length = 660

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 35/86 (40%), Positives = 51/86 (59%)
 Frame = +1

Query: 529 TEDKFFKDTDKLRRGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLHMLPHLHFGLKDKE 708
           TE++F +    +  GDIIG  G   KT+KGELS+  KN ++L   L  LP  + GL D +
Sbjct: 191 TEEQFEQLKTIIDIGDIIGANGSIKKTEKGELSVYVKNFEILTKSLLPLPDKYHGLTDVD 250

Query: 709 TRFRKRYLDLILNDKVRQSFIQELKS 786
            R+R+RY+D+I N +V   F    K+
Sbjct: 251 KRYRQRYVDMIANPEVADVFRTRAKA 276



 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 26/88 (29%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
 Frame = +2

Query: 317 PYPHKFNVSISLEEFIEKYQNLNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAK 496
           PY +K++ + + +E  + Y +L NG+V  +V +S+AGR+ + R  G KL+F  +R +   
Sbjct: 122 PYAYKWDRTHTTKELQDGYTHLENGEVCADVAVSIAGRIVARRAFG-KLVFMTVRDDSGT 180

Query: 497 IQVMLMQNYM-KQKISFLKILINYAEVI 577
           IQ+   ++ + +++   LK +I+  ++I
Sbjct: 181 IQLYCEKDSLTEEQFEQLKTIIDIGDII 208


>03_01_0107 +
           849489-850652,850745-850835,850926-851083,851180-851231,
           852373-852452,852540-852633,852711-853231,854087-854202,
           854242-854293
          Length = 775

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +3

Query: 45  SCIFISILRLSELSPIAMAESSTEKISKNXXXXXXXXXXXXXXXXXXXSQQPV 203
           SC+F ++   SEL+P+  +E S  K  KN                   SQ+PV
Sbjct: 317 SCVFFTVNENSELAPVNSSEGSKSKHYKNSKVSTDPACVVIPHRTFALSQEPV 369


>06_01_0228 -
           1736373-1736721,1739915-1740120,1740513-1740844,
           1740935-1741499
          Length = 483

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 675 QHMKAWCKQFYIFRDNRKFSFLSFTWMAHTTN 580
           +H + W + F +F  NR  +FL   +M HT N
Sbjct: 352 RHHRTWDRLFRLFTRNRMRTFLIEAFMCHTHN 383


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,791,614
Number of Sequences: 37544
Number of extensions: 320985
Number of successful extensions: 663
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)