Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00530
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)              98   6e-21
SB_51219| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.15 
SB_16656| Best HMM Match : Methyltransf_3 (HMM E-Value=1.2e-19)        29   4.4  
SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  

>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1449

 Score = 98.3 bits (234), Expect = 6e-21
 Identities = 46/63 (73%), Positives = 51/63 (80%)
 Frame = +1

Query: 529 TEDKFFKDTDKLRRGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLHMLPHLHFGLKDKE 708
           +E  F    DK+RRGDIIG  G PGKTKKGELSI+P ++ LLAPCLHMLPHLHFGLKDK 
Sbjct: 636 SEQDFNAVHDKIRRGDIIGVKGKPGKTKKGELSILPSSVTLLAPCLHMLPHLHFGLKDK- 694

Query: 709 TRF 717
           TRF
Sbjct: 695 TRF 697



 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 29/51 (56%), Positives = 38/51 (74%)
 Frame = +2

Query: 257 YYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNLNNGDVLENV 409
           Y+K+RS AV ALK    ++ PYPHKF+VSISL +FI+KYQ+  NG   E+V
Sbjct: 75  YFKIRSLAVEALKK--TDEPPYPHKFHVSISLNDFIQKYQDTENGTWSEDV 123



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 23/62 (37%), Positives = 37/62 (59%)
 Frame = +2

Query: 398 LENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMLMQNYMKQKISFLKILINYAEVI 577
           L + +L    R+H+ R SG+KL+FYDLR EG+K+QVM      +Q  + +   I   ++I
Sbjct: 594 LTSCSLQDQRRIHAKRASGSKLLFYDLRGEGSKLQVMADARASEQDFNAVHDKIRRGDII 653

Query: 578 SL 583
            +
Sbjct: 654 GV 655


>SB_51219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
 Frame = +2

Query: 266 LRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNLNNGDVLENVTLSVAGRVHSIR 445
           L SG+V+ L   +K  +    K N ++    F+E + NL+    LEN      GR+ ++ 
Sbjct: 187 LLSGSVSDLIAQIKSRNLVMEKNNHALKTRLFLENFFNLS----LENALTINGGRLDAMT 242

Query: 446 ESGAKLIFYDLRAEGAKIQVMLMQNYMKQKISFLKIL-INYAEV 574
              A+L+   + A  +  ++ L   Y K  IS  ++L +N  E+
Sbjct: 243 LRSARLVEIFINATVSYFEITLSDIYCKLNISMKELLTMNVYEI 286


>SB_16656| Best HMM Match : Methyltransf_3 (HMM E-Value=1.2e-19)
          Length = 613

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 293 KNGLKEDHPYPHKFNVSISLEEFIEKYQNLNNGDVLENVTLSVA 424
           +NG++ ++    K  +++S +E+IEK Q   NG +   V+L  A
Sbjct: 349 ENGIENENK---KRKINLSYQEWIEKVQKKRNGGITRKVSLKQA 389


>SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +1

Query: 577 IIGCV--GHPGKTKKGELSIIPKNIKLLAP 660
           I+GCV  G PGKT+    S IP  +KL  P
Sbjct: 24  IVGCVKMGVPGKTEGTMFSQIPCEVKLTGP 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,806,982
Number of Sequences: 59808
Number of extensions: 374519
Number of successful extensions: 757
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)