Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00530
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41105-3|AAX88810.1|  514|Caenorhabditis elegans Lysyl (k) trna ...   115   5e-26
U41105-2|AAK68395.1|  596|Caenorhabditis elegans Lysyl (k) trna ...   115   5e-26
U41105-1|AAA82396.1|  572|Caenorhabditis elegans Lysyl (k) trna ...   115   5e-26

>U41105-3|AAX88810.1|  514|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform c protein.
          Length = 514

 Score =  115 bits (276), Expect = 5e-26
 Identities = 52/88 (59%), Positives = 64/88 (72%)
 Frame = +1

Query: 508 ANAKLYETEDKFFKDTDKLRRGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLHMLPHLH 687
           ANAK +  +  F    D+++RGDI+G  G   +TK GELS+IP  I  L PCLHMLPH H
Sbjct: 79  ANAKFHTGDVDFVTLHDRIKRGDIVGFTGRATRTKAGELSLIPNEILQLTPCLHMLPHSH 138

Query: 688 FGLKDKETRFRKRYLDLILNDKVRQSFI 771
           FGLKDKE RFRKRYLDLILN +V+ +F+
Sbjct: 139 FGLKDKELRFRKRYLDLILNPRVKDNFV 166



 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 40/81 (49%), Positives = 56/81 (69%)
 Frame = +2

Query: 311 DHPYPHKFNVSISLEEFIEKYQNLNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEG 490
           D+P+PHKFNV+ISL +FI KY  L    V+E + +SVAGR+HS RESG+KL+FYD+  EG
Sbjct: 14  DNPFPHKFNVTISLTDFITKYTPLEKEQVVEEI-VSVAGRIHSKRESGSKLVFYDIHGEG 72

Query: 491 AKIQVMLMQNYMKQKISFLKI 553
             IQ+M    +    + F+ +
Sbjct: 73  THIQIMANAKFHTGDVDFVTL 93


>U41105-2|AAK68395.1|  596|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform b protein.
          Length = 596

 Score =  115 bits (276), Expect = 5e-26
 Identities = 52/88 (59%), Positives = 64/88 (72%)
 Frame = +1

Query: 508 ANAKLYETEDKFFKDTDKLRRGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLHMLPHLH 687
           ANAK +  +  F    D+++RGDI+G  G   +TK GELS+IP  I  L PCLHMLPH H
Sbjct: 161 ANAKFHTGDVDFVTLHDRIKRGDIVGFTGRATRTKAGELSLIPNEILQLTPCLHMLPHSH 220

Query: 688 FGLKDKETRFRKRYLDLILNDKVRQSFI 771
           FGLKDKE RFRKRYLDLILN +V+ +F+
Sbjct: 221 FGLKDKELRFRKRYLDLILNPRVKDNFV 248



 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 43/99 (43%), Positives = 63/99 (63%)
 Frame = +2

Query: 257 YYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNLNNGDVLENVTLSVAGRVH 436
           Y+ +R   + A +     D+P+PHKFNV+ISL +FI KY  L    V+E + +SVAGR+H
Sbjct: 80  YFNMRVRMIEARRAA--GDNPFPHKFNVTISLTDFITKYTPLEKEQVVEEI-VSVAGRIH 136

Query: 437 SIRESGAKLIFYDLRAEGAKIQVMLMQNYMKQKISFLKI 553
           S RESG+KL+FYD+  EG  IQ+M    +    + F+ +
Sbjct: 137 SKRESGSKLVFYDIHGEGTHIQIMANAKFHTGDVDFVTL 175


>U41105-1|AAA82396.1|  572|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform a protein.
          Length = 572

 Score =  115 bits (276), Expect = 5e-26
 Identities = 52/88 (59%), Positives = 64/88 (72%)
 Frame = +1

Query: 508 ANAKLYETEDKFFKDTDKLRRGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLHMLPHLH 687
           ANAK +  +  F    D+++RGDI+G  G   +TK GELS+IP  I  L PCLHMLPH H
Sbjct: 137 ANAKFHTGDVDFVTLHDRIKRGDIVGFTGRATRTKAGELSLIPNEILQLTPCLHMLPHSH 196

Query: 688 FGLKDKETRFRKRYLDLILNDKVRQSFI 771
           FGLKDKE RFRKRYLDLILN +V+ +F+
Sbjct: 197 FGLKDKELRFRKRYLDLILNPRVKDNFV 224



 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 43/99 (43%), Positives = 63/99 (63%)
 Frame = +2

Query: 257 YYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNLNNGDVLENVTLSVAGRVH 436
           Y+ +R   + A +     D+P+PHKFNV+ISL +FI KY  L    V+E + +SVAGR+H
Sbjct: 56  YFNMRVRMIEARRAA--GDNPFPHKFNVTISLTDFITKYTPLEKEQVVEEI-VSVAGRIH 112

Query: 437 SIRESGAKLIFYDLRAEGAKIQVMLMQNYMKQKISFLKI 553
           S RESG+KL+FYD+  EG  IQ+M    +    + F+ +
Sbjct: 113 SKRESGSKLVFYDIHGEGTHIQIMANAKFHTGDVDFVTL 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,918,997
Number of Sequences: 27780
Number of extensions: 303491
Number of successful extensions: 736
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)