Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00529
         (790 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    25   0.69 
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   4.9  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   4.9  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 670 CGHPQCVSRGIFC 708
           CG   C+ RG+FC
Sbjct: 124 CGDGNCIERGLFC 136


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +1

Query: 670 CGHPQCVSRGIFC 708
           CG+ +C+ + +FC
Sbjct: 116 CGNGECIDKELFC 128


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +1

Query: 670 CGHPQCVSRGIFC 708
           CG+ +C+ + +FC
Sbjct: 123 CGNGECIDKELFC 135


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,745
Number of Sequences: 336
Number of extensions: 3196
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)