Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00529
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    27   3.1  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   5.4  
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce...    26   5.4  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    25   9.4  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    25   9.4  

>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 663 EPLRSSTVCFQRYFLLRTIRLWNELPSTVFTERLTC 770
           + ++S+  C Q    L +I  W +LPS  + E L C
Sbjct: 81  DAVKSTIKCKQCQSFLTSISSWKDLPSANWMEMLDC 116


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +3

Query: 564 HGECSEELFEMIPASHFY--HRTARHRSRVHPYYLEPLRSSTVCFQRYFLLR 713
           H  CS  L + I  + F+  H        V   Y E LRS T C Q Y+ LR
Sbjct: 22  HWFCSGLLTQYIQPTFFWFAHDETPSFKWVLNAYHERLRSCTSCIQAYYELR 73


>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 615 KNEMPVSSQTIPQSTLH-GTYSTKYRGNRSPSADPEVQITLIVS 487
           K+ MPV S +I   + H  +Y    +   SP  DP+  + LIVS
Sbjct: 30  KSSMPVYSNSIGSPSAHSSSYKGVSKAKTSPQ-DPDSVVMLIVS 72


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +2

Query: 167 SRDKSPEVSADIPVELMEISKAMAPMTKEDGRKNRVLLEEYWMRKQEDTGYPI 325
           SRD+  E+S D+P+ ++  S A      +    N+ L E      +E    P+
Sbjct: 279 SRDEDSELSIDVPLSMLNRSLANNSQKNKKRTPNKPLQESSINSVKEGESNPV 331


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 602 RYHLKQFLRALSMEHTVQNTEGTEVPPQTQ 513
           RY L+Q L+   +EH +  TE  + PP+ +
Sbjct: 85  RYGLEQQLKTNPLEHPILITEPFDNPPENR 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,723
Number of Sequences: 5004
Number of extensions: 54930
Number of successful extensions: 188
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)