Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00529
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0995 + 25104303-25104486,25105164-25105275,25106466-251065...    29   5.6  
05_05_0345 - 24237991-24238868,24238956-24239307                       29   5.6  
05_04_0444 + 21288806-21289054,21289177-21289248,21290137-212901...    28   7.4  
10_08_0601 + 19103745-19105162,19105253-19105717,19106314-19106539     28   9.7  
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492...    28   9.7  

>12_02_0995 +
           25104303-25104486,25105164-25105275,25106466-25106554,
           25106635-25106703,25106784-25106913,25107073-25107231,
           25107364-25107736,25108070-25108182,25108429-25108624,
           25108855-25109288,25109360-25109495,25109668-25111086
          Length = 1137

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 660 GSMDELYSGGGRCDGKNEMPVSSQTIPQSTLHGTYSTKYRGNRSPSADP 514
           G++ E Y+G GR     E+P   Q+    +L    S++   N +PS  P
Sbjct: 3   GTLIEDYTGDGRSSSTEELPSDQQSHSGESLAEWRSSEQVENGTPSTSP 51


>05_05_0345 - 24237991-24238868,24238956-24239307
          Length = 409

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -1

Query: 601 GIISNNSSEHSPWNIQYKIQREPKSLRRPRGPNYFDC*YFIIIDMF*AHLPHQAG 437
           G+I     +      Q KIQ+  + LRR + P+   C    ++ +   HLP + G
Sbjct: 145 GLIDKTKEQIGSSTKQSKIQQRERELRRQQAPSPGTCSCASLLQIALRHLPRRGG 199


>05_04_0444 +
           21288806-21289054,21289177-21289248,21290137-21290166,
           21290983-21291081
          Length = 149

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +2

Query: 161 SQSRDKSPEVSADIPVELMEISKAMAPMTKEDGRKNRVLLEEYW 292
           ++SR++     A++  ++ E+ +  A + +E   KN+  L+E W
Sbjct: 76  ARSRERKQAYIAELEAQVAELEEEHAQLLREQEEKNQKRLKEKW 119


>10_08_0601 + 19103745-19105162,19105253-19105717,19106314-19106539
          Length = 702

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 241 DDKRGWEKKQSIIRRVLDEETGRYR 315
           +DK+ WEK+ +  +R L    GRYR
Sbjct: 527 EDKKLWEKRVAYYKRTLPIADGRYR 551


>05_07_0093 -
           27648656-27648736,27649034-27649147,27649229-27649288,
           27649464-27649687,27649799-27649886,27650326-27650532,
           27650566-27650784,27650903-27651001,27651439-27651504,
           27651654-27651737,27651829-27651888,27652041-27652325,
           27652789-27652836,27652988-27653034,27653442-27653556,
           27653958-27654032,27654227-27654298,27654944-27656124,
           27656613-27656757
          Length = 1089

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 161 SQSRDKSPEVSADIPVELMEISKAMAPMTKEDGRKNRV 274
           S S+++S   SAD+PV L+E+      + KE+  +  V
Sbjct: 368 SNSQNESVPTSADVPVGLVEVGSNSNDLRKEENIQGSV 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,533,743
Number of Sequences: 37544
Number of extensions: 374847
Number of successful extensions: 1037
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)