Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00529
(790 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.012
SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.028
SB_26110| Best HMM Match : HipA_C (HMM E-Value=5.5) 36 0.028
SB_20783| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.028
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 36 0.028
SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0) 36 0.049
SB_25497| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.086
SB_14729| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30) 33 0.20
SB_51257| Best HMM Match : Pox_F16 (HMM E-Value=4.1) 32 0.46
SB_7946| Best HMM Match : DUF434 (HMM E-Value=7.5) 32 0.61
SB_51961| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1) 31 1.4
SB_40344| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_17278| Best HMM Match : RVT_1 (HMM E-Value=0.0082) 31 1.4
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 31 1.4
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 31 1.4
SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 30 2.5
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_43828| Best HMM Match : XPG_N (HMM E-Value=1.8) 29 3.2
SB_31373| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4) 29 3.2
SB_30049| Best HMM Match : FBA_2 (HMM E-Value=7) 29 3.2
SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072) 29 3.2
SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8) 29 3.2
SB_4935| Best HMM Match : Pox_F16 (HMM E-Value=5.3) 29 3.2
SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33) 29 3.2
SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.2
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 29 3.2
SB_33076| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4) 29 3.2
SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.2
SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32) 29 3.2
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34) 29 3.2
SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08) 29 4.3
SB_40765| Best HMM Match : DX (HMM E-Value=1.4) 29 5.7
SB_31120| Best HMM Match : Pox_F16 (HMM E-Value=5) 28 7.5
SB_26191| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_8382| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_19530| Best HMM Match : EMI (HMM E-Value=3.5) 28 9.9
SB_53803| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
>SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 37.5 bits (83), Expect = 0.012
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +3
Query: 510 PLGLRRDFGSLCILYCMFHGECSEELFEMI-PASHFYHRTARHRSRVHPYYLEPLRSSTV 686
PL RRD L +L+ + +G+ S L ++ PA+ Y+ H + ++ +
Sbjct: 192 PLEYRRDITDLVLLFKIKNGDVSISLASLLSPATSRYNTRNYHSNNYRLFFTH----NQN 247
Query: 687 CFQRYFLLRTIRLWNELPS 743
++ + RT++LWN LPS
Sbjct: 248 YYRNSYFPRTVKLWNSLPS 266
>SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 792
Score = 36.3 bits (80), Expect = 0.028
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +3
Query: 510 PLGLRRDFGSLCILYCMFHGECSEELFEMI-PASHFYHRTARHRSRVHPYYLEPLRSSTV 686
PL RRD L +L+ + +G+ S ++ PA+ Y+ + H + Y L +
Sbjct: 689 PLEYRRDITDLVLLFKIKNGDVSISSASLLSPATSRYNTRSYHPNN---YRLFSTHNQNY 745
Query: 687 CFQRYFLLRTIRLWNELPS 743
YF RT++LWN LPS
Sbjct: 746 YRNSYFP-RTVKLWNSLPS 763
>SB_26110| Best HMM Match : HipA_C (HMM E-Value=5.5)
Length = 210
Score = 36.3 bits (80), Expect = 0.028
Identities = 24/76 (31%), Positives = 37/76 (48%)
Frame = +3
Query: 522 RRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVCFQRY 701
+R S IL+ FH ++ +P R+ R R YY + L+++T+ F
Sbjct: 112 QRRLTSQAILFYKFHNSL---IYAKLP--DLVTRSTRSTRRKELYYNQ-LQANTLAFNYS 165
Query: 702 FLLRTIRLWNELPSTV 749
F R IR+WN LP+ V
Sbjct: 166 FFARAIRIWNLLPNDV 181
>SB_20783| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 36.3 bits (80), Expect = 0.028
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +3
Query: 510 PLGLRRDFGSLCILYCMFHGECSEELFEMI-PASHFYHRTARHRSRVHPYYLEPLRSSTV 686
PL RRD L +L+ + +G+ S ++ PA+ Y+ + H + Y L +
Sbjct: 192 PLEYRRDITDLVLLFKIKNGDVSISSASLLSPATSRYNTRSYHPNN---YRLFSTHNQNY 248
Query: 687 CFQRYFLLRTIRLWNELPS 743
YF RT++LWN LPS
Sbjct: 249 YRNSYFP-RTVKLWNSLPS 266
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 36.3 bits (80), Expect = 0.028
Identities = 24/76 (31%), Positives = 37/76 (48%)
Frame = +3
Query: 522 RRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVCFQRY 701
+R S IL+ FH ++ +P R+ R R YY + L+++T+ F
Sbjct: 472 QRRLTSQAILFYKFHNSL---IYAKLP--DLVTRSTRSTRRKELYYNQ-LQANTLAFNYS 525
Query: 702 FLLRTIRLWNELPSTV 749
F R IR+WN LP+ V
Sbjct: 526 FFARAIRIWNLLPNDV 541
>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 885
Score = 35.5 bits (78), Expect = 0.049
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +3
Query: 630 RHRSRVHPYYLEPLRSSTVCFQRYFLLRTIRLWNELPSTVFTERLTCP 773
R R HP PL +S+ F RTI WN LP+ +F E + P
Sbjct: 823 RKTRRSHPESFIPLSTSSASEHLSFFSRTIIQWNNLPALLFNEPCSLP 870
>SB_25497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 372
Score = 34.7 bits (76), Expect = 0.086
Identities = 24/76 (31%), Positives = 36/76 (47%)
Frame = +3
Query: 522 RRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVCFQRY 701
+R S IL+ FH + +P R+ R R YY + L+++T+ F
Sbjct: 266 QRRLTSQAILFYKFHNSL---IHAKLP--DLVTRSTRSTRRKELYYNQ-LQANTLAFNYS 319
Query: 702 FLLRTIRLWNELPSTV 749
F R IR+WN LP+ V
Sbjct: 320 FFARAIRIWNLLPNDV 335
>SB_14729| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3
Query: 621 RTARHRSRVHPYYLEPLRSSTVCFQRYFLLRTIRLWNELPSTV 749
R+ R R YY + L+++T+ F F R IR+WN LP+ V
Sbjct: 245 RSTRSTRRKELYYNQ-LQANTLAFNYSFFARAIRIWNLLPNDV 286
>SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 1280
Score = 33.5 bits (73), Expect = 0.20
Identities = 23/76 (30%), Positives = 35/76 (46%)
Frame = +3
Query: 522 RRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVCFQRY 701
+R S IL+ FH ++ +P R+ R R Y L+++T+ F
Sbjct: 1182 QRRLTSQAILFYKFHNSL---IYAKLP--DLVTRSTRSTRRKE-LYCNQLQANTLTFNYS 1235
Query: 702 FLLRTIRLWNELPSTV 749
F R IR+WN LP+ V
Sbjct: 1236 FFARAIRIWNLLPNDV 1251
>SB_51257| Best HMM Match : Pox_F16 (HMM E-Value=4.1)
Length = 243
Score = 32.3 bits (70), Expect = 0.46
Identities = 23/79 (29%), Positives = 32/79 (40%)
Frame = +3
Query: 513 LGLRRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVCF 692
L +RR LC+ Y + L + F R R+ Y ++S+ +
Sbjct: 143 LEVRRQLAQLCLFY-----KIRNNLVNIALPQQFQPNLRRSRTNSSKY--NQIQSNVLSH 195
Query: 693 QRYFLLRTIRLWNELPSTV 749
F RTIR WN LPS V
Sbjct: 196 SYSFFPRTIRTWNLLPSEV 214
>SB_7946| Best HMM Match : DUF434 (HMM E-Value=7.5)
Length = 294
Score = 31.9 bits (69), Expect = 0.61
Identities = 24/77 (31%), Positives = 36/77 (46%)
Frame = +3
Query: 510 PLGLRRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVC 689
PL RR L + Y + + + E+ + I RT + RS HP L +T
Sbjct: 205 PLSKRRQNARLTLFYKAVNKKSALEIPDNID-----RRTRQLRSS-HPDKFIELCPTTEA 258
Query: 690 FQRYFLLRTIRLWNELP 740
++ F RTI+ WN+LP
Sbjct: 259 YKNSFFCRTIKEWNKLP 275
>SB_51961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 639 SRVHPYYLEPLRSSTVCFQRYFLLRTIRLWNELPSTVFTE 758
+R H + L+S+ + + F R IR+WN LPS V +
Sbjct: 122 TRRHNHSFLQLQSNILSYNYSFFPRAIRIWNLLPSNVINQ 161
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 600 PASHFYHRTARHRS-RVHPYYLEPLRSSTVCFQRYFLLRTIRLWNELPSTV 749
P+ + R RS R H L+++ + F F RTIR WN LP+ V
Sbjct: 1059 PSEYDLRRNENIRSSRRHSRTYHQLQANILAFNYSFFPRTIRTWNLLPAEV 1109
>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 2075
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 639 SRVHPYYLEPLRSSTVCFQRYFLLRTIRLWNELPSTV 749
SR H L+++ + F F RTIR WN LP+ V
Sbjct: 1627 SRRHSRTYHQLQANILAFNYSFFPRTIRTWNLLPAEV 1663
>SB_40344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 401
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/77 (31%), Positives = 35/77 (45%)
Frame = +3
Query: 510 PLGLRRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVC 689
PL RR L + Y + + + ++ + I RT + RS HP L T
Sbjct: 314 PLSKRRQDARLTLFYKAVNKKSALKIPDNID-----RRTRQLRSS-HPDKFIELCPRTEA 367
Query: 690 FQRYFLLRTIRLWNELP 740
F+ F RTI+ WN+LP
Sbjct: 368 FKNSFFCRTIKEWNKLP 384
>SB_17278| Best HMM Match : RVT_1 (HMM E-Value=0.0082)
Length = 506
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 639 SRVHPYYLEPLRSSTVCFQRYFLLRTIRLWNELPSTVFTE 758
+R H + L+S+ + + F R IR+WN LPS V +
Sbjct: 441 TRRHNHSFLQLQSNILSYNYSFFPRAIRIWNLLPSNVVNQ 480
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 639 SRVHPYYLEPLRSSTVCFQRYFLLRTIRLWNELPSTVFTE 758
+R H + L+S+ + + F R IR+WN LPS V +
Sbjct: 1427 TRRHNHSFLQLQSNILSYNYSFFPRAIRIWNLLPSNVVNQ 1466
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 639 SRVHPYYLEPLRSSTVCFQRYFLLRTIRLWNELPSTVFTE 758
+R H + L+S+ + + F R IR+WN LPS V +
Sbjct: 387 TRRHNHSFLQLQSNILSYNYSFFPRAIRIWNLLPSNVVNQ 426
>SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
Length = 888
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 597 IPASHFYHRTARHRSRVHPYYLEPLRSSTVCFQRYFLLRTIRLWNELPSTV 749
+P S R HP + + + T F+ F+ R IRLWN L TV
Sbjct: 713 LPLSTLSKPLRRSERTSHPEHYDIPYARTNIFKYSFVPRAIRLWNSLEVTV 763
>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/79 (27%), Positives = 31/79 (39%)
Frame = +3
Query: 513 LGLRRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVCF 692
L +RR LC+ Y + L + F R+ Y ++S+ +
Sbjct: 818 LEVRRQLAQLCLFY-----KIRNNLVNIALPQQFQPNLRPSRTNSSKY--NQIQSNVLSH 870
Query: 693 QRYFLLRTIRLWNELPSTV 749
F RTIR WN LPS V
Sbjct: 871 SYSFFPRTIRTWNLLPSEV 889
>SB_43828| Best HMM Match : XPG_N (HMM E-Value=1.8)
Length = 174
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/77 (32%), Positives = 32/77 (41%)
Frame = +3
Query: 513 LGLRRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVCF 692
L LRR L +LY + G+ + M H RT S YY E + +
Sbjct: 79 LELRRTMARLTLLYKLSRGQIDIDT-SMYLRPHQDLRT--RNSHNFKYYQEKATKNKYFY 135
Query: 693 QRYFLLRTIRLWNELPS 743
F RTIR WN LP+
Sbjct: 136 S--FFPRTIRHWNTLPN 150
>SB_31373| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4)
Length = 198
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/79 (27%), Positives = 31/79 (39%)
Frame = +3
Query: 513 LGLRRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVCF 692
L +RR LC+ Y + L + F R+ Y ++S+ +
Sbjct: 98 LEVRRQLAQLCLFY-----KIRNNLVNIALPQQFQPNLRPSRTNSSKY--NQIQSNVLSH 150
Query: 693 QRYFLLRTIRLWNELPSTV 749
F RTIR WN LPS V
Sbjct: 151 SYSFFPRTIRTWNLLPSEV 169
>SB_30049| Best HMM Match : FBA_2 (HMM E-Value=7)
Length = 282
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 669 LRSSTVCFQRYFLLRTIRLWNELPSTVFTE 758
L+S+ + + F R IR+WN LPS V +
Sbjct: 227 LQSNILSYNYSFFARAIRIWNLLPSNVVNQ 256
>SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072)
Length = 375
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/77 (32%), Positives = 32/77 (41%)
Frame = +3
Query: 513 LGLRRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVCF 692
L LRR L +LY + G+ + M H RT S YY E + +
Sbjct: 280 LELRRTMARLTLLYKLSRGQIDIDT-NMYLRPHQDLRT--RNSHNFKYYQEKATKNKYFY 336
Query: 693 QRYFLLRTIRLWNELPS 743
F RTIR WN LP+
Sbjct: 337 S--FFPRTIRHWNTLPN 351
>SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8)
Length = 361
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/77 (32%), Positives = 32/77 (41%)
Frame = +3
Query: 513 LGLRRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVCF 692
L LRR L +LY + G+ + M H RT S YY E + +
Sbjct: 266 LELRRTMARLTLLYKLSRGQIDIDT-SMYLRPHQDLRT--RNSHNFKYYQEKATKNKYFY 322
Query: 693 QRYFLLRTIRLWNELPS 743
F RTIR WN LP+
Sbjct: 323 S--FFPRTIRHWNTLPN 337
>SB_4935| Best HMM Match : Pox_F16 (HMM E-Value=5.3)
Length = 243
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/79 (27%), Positives = 31/79 (39%)
Frame = +3
Query: 513 LGLRRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVCF 692
L +RR LC+ Y + L + F R+ Y ++S+ +
Sbjct: 143 LEVRRQLAQLCLFY-----KIRNNLVNIALPQQFQPNLRPSRTNSSKY--NQIQSNVLSH 195
Query: 693 QRYFLLRTIRLWNELPSTV 749
F RTIR WN LPS V
Sbjct: 196 SYSFFPRTIRTWNLLPSEV 214
>SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33)
Length = 609
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/77 (32%), Positives = 32/77 (41%)
Frame = +3
Query: 513 LGLRRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVCF 692
L LRR L +LY + G+ + M H RT S YY E + +
Sbjct: 512 LELRRTMARLTLLYKLSRGQIDIDT-SMYLRPHQDLRT--RNSHNFKYYQEKATKNKYFY 568
Query: 693 QRYFLLRTIRLWNELPS 743
F RTIR WN LP+
Sbjct: 569 S--FFPRTIRHWNTLPN 583
>SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 581
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/77 (32%), Positives = 32/77 (41%)
Frame = +3
Query: 513 LGLRRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVCF 692
L LRR L +LY + G+ + M H RT S YY E + +
Sbjct: 486 LELRRTMARLTLLYKLSRGQIDIDT-NMYLRPHQDLRT--RNSHNFKYYQEKATKNKYFY 542
Query: 693 QRYFLLRTIRLWNELPS 743
F RTIR WN LP+
Sbjct: 543 S--FFPRTIRHWNTLPN 557
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/79 (27%), Positives = 31/79 (39%)
Frame = +3
Query: 513 LGLRRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVCF 692
L +RR LC+ Y + L + F R+ Y ++S+ +
Sbjct: 405 LEVRRQLAQLCLFY-----KIRNNLVNIALPQQFQPNLRPSRTNSSKY--NQIQSNVLSH 457
Query: 693 QRYFLLRTIRLWNELPSTV 749
F RTIR WN LPS V
Sbjct: 458 SYSFFPRTIRTWNLLPSEV 476
>SB_33076| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4)
Length = 152
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/79 (27%), Positives = 31/79 (39%)
Frame = +3
Query: 513 LGLRRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVCF 692
L +RR LC+ Y + L + F R+ Y ++S+ +
Sbjct: 52 LEVRRQLAQLCLFY-----KIRNNLVNIALPQQFQPNLRPSRTNSSKY--NQIQSNVLSH 104
Query: 693 QRYFLLRTIRLWNELPSTV 749
F RTIR WN LPS V
Sbjct: 105 SYSFFPRTIRTWNLLPSEV 123
>SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/79 (27%), Positives = 31/79 (39%)
Frame = +3
Query: 513 LGLRRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVCF 692
L +RR LC+ Y + L + F R+ Y ++S+ +
Sbjct: 509 LEVRRQLAQLCLFY-----KIRNNLVNIALPQQFQPNLRPSRTNSSKY--NQIQSNVLSH 561
Query: 693 QRYFLLRTIRLWNELPSTV 749
F RTIR WN LPS V
Sbjct: 562 SYSFFPRTIRTWNLLPSEV 580
>SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 666
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/77 (32%), Positives = 32/77 (41%)
Frame = +3
Query: 513 LGLRRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVCF 692
L LRR L +LY + G+ + M H RT S YY E + +
Sbjct: 571 LELRRTMARLTLLYKLSRGQIDIDT-SMYLRPHQDLRT--RNSHNFKYYQEKATKNKYFY 627
Query: 693 QRYFLLRTIRLWNELPS 743
F RTIR WN LP+
Sbjct: 628 S--FFPRTIRHWNTLPN 642
>SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32)
Length = 698
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/77 (28%), Positives = 37/77 (48%)
Frame = +3
Query: 510 PLGLRRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVC 689
PL RR L + Y + + + ++ + I RT + RS + ++E L T
Sbjct: 611 PLSKRRQDARLTLFYKAVNKKSALKIPDNID-----RRTRQLRSSLPDKFIE-LCPRTEA 664
Query: 690 FQRYFLLRTIRLWNELP 740
++ F RTI+ WN+LP
Sbjct: 665 YKNSFFCRTIKEWNKLP 681
>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
Length = 837
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/79 (27%), Positives = 31/79 (39%)
Frame = +3
Query: 513 LGLRRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVCF 692
L +RR LC+ Y + L + F R+ Y ++S+ +
Sbjct: 737 LEVRRQLAQLCLFY-----KIRNNLVNIALPQQFQPNLRPSRTNSSKY--NQIQSNVLSH 789
Query: 693 QRYFLLRTIRLWNELPSTV 749
F RTIR WN LPS V
Sbjct: 790 SYSFFPRTIRTWNLLPSEV 808
>SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)
Length = 1420
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 666 APGSMDELYSGGGRCDGKNEMPVSSQTIPQSTLHGTYSTKY 544
AP S+++ GGG C G+N +PV+ P L G T Y
Sbjct: 770 APTSLEDFKWGGGPCLGENGVPVN----PNIALGGFEGTDY 806
>SB_40765| Best HMM Match : DX (HMM E-Value=1.4)
Length = 278
Score = 28.7 bits (61), Expect = 5.7
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = +3
Query: 513 LGLRRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVCF 692
L LRR L +LY + G+ + + H+ R R+ + Y + + F
Sbjct: 183 LELRRTMARLTLLYKLSRGQIDIDTSTYLRP----HQDLRTRNSHNFKYYQEKATKNKYF 238
Query: 693 QRYFLLRTIRLWNELPS 743
+F RTIR WN LP+
Sbjct: 239 YSFFP-RTIRHWNTLPN 254
>SB_31120| Best HMM Match : Pox_F16 (HMM E-Value=5)
Length = 284
Score = 28.3 bits (60), Expect = 7.5
Identities = 21/79 (26%), Positives = 31/79 (39%)
Frame = +3
Query: 513 LGLRRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVCF 692
L +RR LC+ Y + L + F R+ Y ++S+ +
Sbjct: 184 LEVRRQLAQLCLFY-----KIRNNLVNIALPQQFQPNLRPSRTNSSKY--NQIQSNVLSH 236
Query: 693 QRYFLLRTIRLWNELPSTV 749
F RTIR WN LP+ V
Sbjct: 237 SYSFFPRTIRTWNLLPAQV 255
>SB_26191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 648 HPYYLEPLRSSTVCFQRYFLLRTI-RLW 728
HPYY E + SS + F+ ++RTI R W
Sbjct: 78 HPYYSERMLSSVLLFRENGIIRTIQREW 105
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 636 RSRVHPYYLEPLRSSTVCFQRYFLLRTIRLWNELPSTVFTERL 764
R HPYY E + SS + F+ ++RTI+ E T ++ER+
Sbjct: 103 REWYHPYYSERMLSS-ILFRENAIIRTIK--REWYHTYYSERI 142
>SB_8382| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 882
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 164 QSRDKSPEVSADIPVELMEISKAMAPMTKEDGRKNRVLLEE 286
++R SPE +A IP + +A + DGR N ++ EE
Sbjct: 492 KNRATSPETAATIPCQRQGFFRAQDGPRRIDGRTNSLIQEE 532
>SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 648 HPYYLEPLRSSTVCFQRYFLLRTIRLWNELPSTVFTE 758
HP + T F+ F IR+WN LP + T+
Sbjct: 616 HPQRFALVSCKTNVFKESFFPHAIRMWNGLPVSTITQ 652
>SB_19530| Best HMM Match : EMI (HMM E-Value=3.5)
Length = 244
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 648 HPYYLEPLRSSTVCFQRYFLLRTIRLWNELPSTVFTE 758
HP + T F+ F IR+WN LP + T+
Sbjct: 198 HPQRFALVSCKTNVFKESFFPHAIRMWNGLPVSTITQ 234
>SB_53803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 27.9 bits (59), Expect = 9.9
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +1
Query: 535 VPSVFCTVCSMESALRNCLR*YRHLIFTIAPPATGVEFIHTTWSHCGHPQCVSRGIFCYV 714
VP+V TV ++ S + N + +++F+ P G IH+T CG PQC C +
Sbjct: 393 VPNVVFTVPNVVSTVPNVVSTVPNVVFS---PQCG---IHST--QCGSPQCGIHSTQCGI 444
Query: 715 PSGYGMSSPPRC 750
S P+C
Sbjct: 445 HSTQCGIHSPQC 456
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,000,928
Number of Sequences: 59808
Number of extensions: 418938
Number of successful extensions: 1307
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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