Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00529
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024876-12|AAF60896.2|  498|Caenorhabditis elegans Hypothetical...    31   1.2  
AF077546-4|AAC26317.2|  704|Caenorhabditis elegans Hypothetical ...    29   2.9  

>AC024876-12|AAF60896.2|  498|Caenorhabditis elegans Hypothetical
           protein Y94H6A.1 protein.
          Length = 498

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/81 (28%), Positives = 39/81 (48%)
 Frame = +3

Query: 504 FGPLGLRRDFGSLCILYCMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSST 683
           +G L ++R+    C         CS E F+ +    F  +TA HR+      +EP+ S  
Sbjct: 309 YGFLKIQREEFENCPEDGQIPAPCSAEWFQELSGLSFEAQTAVHRAISE--IMEPMDSLD 366

Query: 684 VCFQRYFLLRTIRLWNELPST 746
           V  +   L++ I +++E PST
Sbjct: 367 VSIEELVLMKFIMMFSE-PST 386


>AF077546-4|AAC26317.2|  704|Caenorhabditis elegans Hypothetical
           protein T08E11.4 protein.
          Length = 704

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = -2

Query: 699 TSGNTLWMTAVAPGSMDELYS--GGGRCDGKNEMPVSSQTIPQSTLHGTYSTKYRGNRSP 526
           TSG T ++T V   ++D   S          +++ V  +T+P S+    + T YR ++ P
Sbjct: 101 TSG-TKYLTTVQSSNLDSAASPLSFSGHTAPSKIAVVRETLPVSSQASIFPTSYRSSQYP 159

Query: 525 SADPEVQITLIVSILSS 475
             +P  ++T    I  S
Sbjct: 160 FLNPSTKVTTTPPIQQS 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,577,508
Number of Sequences: 27780
Number of extensions: 311390
Number of successful extensions: 922
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)