Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00529
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.3  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    22   7.5  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 172 RQKSRGICRYTS*IDGDLKGHGTDDKRGWEKKQSI 276
           RQ S  I   +S ++ +L+G    + R  EK+QS+
Sbjct: 371 RQNSCNIYNASSRMENNLRGETQSNYREMEKRQSV 405


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 574 HSPWNIQYKIQREPKSL 524
           H PWN    +QR  K +
Sbjct: 462 HEPWNAPLNVQRAAKCI 478


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 519 LRRDFGSLCILYCMFH 566
           L++DFG+    YC+ H
Sbjct: 10  LKKDFGTYFQQYCLHH 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,870
Number of Sequences: 438
Number of extensions: 4075
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)